FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0594, 1101 aa
  1>>>pF1KA0594 1101 - 1101 aa - 1101 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2385+/-0.00143; mu= -0.3810+/- 0.085
 mean_var=287.9277+/-60.825, 0's: 0 Z-trim(107.6): 92  B-trim: 0 in 0/51
 Lambda= 0.075584
 statistics sampled from 9602 (9668) to 9602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.297), width:  16
 Scan time:  4.980

The best scores are:                                      opt bits E(32554)
CCDS6632.1 SMC5 gene_id:23137|Hs108|chr9           (1101) 7172 797.1       0


>>CCDS6632.1 SMC5 gene_id:23137|Hs108|chr9                (1101 aa)
 initn: 7172 init1: 7172 opt: 7172  Z-score: 4244.1  bits: 797.1 E(32554):    0
Smith-Waterman score: 7172; 99.9% identity (100.0% similar) in 1101 aa overlap (1-1101:1-1101)

               10        20        30        40        50        60
pF1KA0 MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 FLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 GMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 QDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 QRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 EGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALI
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EGQIPVTCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 VKQNEELDRQRRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VKQNEELDRQRRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 IIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 VCEPIMLTINMKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VCEPIMLTINMKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 PKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 ERVIQETRLKQIYTAEEKYVVKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ERVIQETRLKQIYTAEEKYVVKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 EIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 MEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHIQKVDLILQNTTVISE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHIQKVDLILQNTTVISE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 KNKLESDYMAASSQLRLTEQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KNKLESDYMAASSQLRLTEQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 TQVPTIPNGHNSSLPMVFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TQVPTIPNGHNSSLPMVFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 EQLTEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EQLTEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHT
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 INQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 INQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEP
             1030      1040      1050      1060      1070      1080

             1090      1100 
pF1KA0 NTWNLKAFQRRRRRITFTQPS
       :::::::::::::::::::::
CCDS66 NTWNLKAFQRRRRRITFTQPS
             1090      1100 




1101 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:49:30 2016 done: Thu Nov  3 09:49:31 2016
 Total Scan time:  4.980 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]