Result of FASTA (omim) for
pF1KA0577
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0577, 1041 aa
1>>>pF1KA0577 1041 - 1041 aa - 1041 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.9497+/-0.000612; mu= -4.6306+/- 0.038
mean_var=395.1916+/-79.853, 0's: 0 Z-trim(116.3): 104 B-trim: 803 in 1/55
Lambda= 0.064516
statistics sampled from 27352 (27453) to 27352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.322), width: 16
Scan time: 16.600
The best scores are: opt bits E(85289)
NP_003578 (OMIM: 603405) putative pre-mRNA-splicin (1041) 6778 646.7 1.9e-184
NP_001157711 (OMIM: 603405) putative pre-mRNA-spli ( 981) 6323 604.4 1e-171
XP_011513240 (OMIM: 603405) PREDICTED: putative pr ( 742) 4866 468.6 5.6e-131
XP_011513241 (OMIM: 603405) PREDICTED: putative pr ( 742) 4866 468.6 5.6e-131
XP_011513242 (OMIM: 603405) PREDICTED: putative pr ( 560) 3474 339.0 4.6e-92
XP_011513243 (OMIM: 603405) PREDICTED: putative pr ( 524) 3464 338.0 8.3e-92
NP_001309145 (OMIM: 600396) ATP-dependent RNA heli ( 945) 2590 256.9 3.9e-67
NP_001309146 (OMIM: 600396) ATP-dependent RNA heli (1129) 2590 257.0 4.4e-67
NP_001309150 (OMIM: 600396) ATP-dependent RNA heli (1218) 2590 257.0 4.7e-67
NP_004932 (OMIM: 600396) ATP-dependent RNA helicas (1220) 2590 257.0 4.7e-67
NP_001309148 (OMIM: 600396) ATP-dependent RNA heli (1169) 2446 243.6 4.9e-63
NP_001309149 (OMIM: 600396) ATP-dependent RNA heli (1152) 2422 241.3 2.3e-62
NP_001309147 (OMIM: 600396) ATP-dependent RNA heli (1179) 2422 241.4 2.3e-62
NP_001289552 (OMIM: 600396) ATP-dependent RNA heli (1181) 2422 241.4 2.3e-62
NP_054722 (OMIM: 605584) pre-mRNA-splicing factor (1227) 2331 232.9 8.5e-60
XP_011521786 (OMIM: 605584) PREDICTED: pre-mRNA-sp (1227) 2331 232.9 8.5e-60
XP_011521787 (OMIM: 605584) PREDICTED: pre-mRNA-sp (1227) 2331 232.9 8.5e-60
XP_016879402 (OMIM: 605584) PREDICTED: pre-mRNA-sp (1192) 2325 232.3 1.2e-59
XP_005256326 (OMIM: 605584) PREDICTED: pre-mRNA-sp (1192) 2325 232.3 1.2e-59
NP_001349 (OMIM: 603403) pre-mRNA-splicing factor ( 795) 2076 209.0 8.7e-53
NP_064547 (OMIM: 614405) putative ATP-dependent RN ( 707) 1852 188.1 1.5e-46
NP_001186628 (OMIM: 614405) putative ATP-dependent ( 534) 1462 151.7 1e-35
XP_011525852 (OMIM: 615475) PREDICTED: probable AT (1143) 1131 121.2 3.4e-26
XP_011525853 (OMIM: 615475) PREDICTED: probable AT (1143) 1131 121.2 3.4e-26
XP_005259500 (OMIM: 615475) PREDICTED: probable AT (1143) 1131 121.2 3.4e-26
NP_055496 (OMIM: 615475) probable ATP-dependent RN (1143) 1131 121.2 3.4e-26
XP_016871894 (OMIM: 607960) PREDICTED: putative pr ( 743) 1096 117.7 2.4e-25
XP_016871893 (OMIM: 607960) PREDICTED: putative pr ( 743) 1096 117.7 2.4e-25
NP_060650 (OMIM: 607960) putative pre-mRNA-splicin ( 743) 1096 117.7 2.4e-25
XP_016880572 (OMIM: 607570) PREDICTED: probable AT ( 640) 876 97.2 3.1e-19
XP_016880571 (OMIM: 607570) PREDICTED: probable AT ( 640) 876 97.2 3.1e-19
XP_011523556 (OMIM: 607570) PREDICTED: probable AT ( 680) 876 97.2 3.3e-19
NP_001159773 (OMIM: 607570) probable ATP-dependent ( 702) 876 97.2 3.3e-19
XP_016880569 (OMIM: 607570) PREDICTED: probable AT ( 723) 876 97.2 3.4e-19
NP_078888 (OMIM: 607570) probable ATP-dependent RN ( 779) 876 97.3 3.6e-19
XP_011523555 (OMIM: 607570) PREDICTED: probable AT ( 718) 660 77.1 3.8e-13
XP_016880366 (OMIM: 614405) PREDICTED: putative AT ( 279) 646 75.4 4.8e-13
NP_065916 (OMIM: 612767) ATP-dependent RNA helicas (1008) 644 75.8 1.4e-12
XP_016880570 (OMIM: 607570) PREDICTED: probable AT ( 653) 597 71.2 2.1e-11
XP_006722146 (OMIM: 607570) PREDICTED: probable AT ( 752) 597 71.3 2.3e-11
NP_001107869 (OMIM: 612767) ATP-dependent RNA heli ( 994) 574 69.3 1.2e-10
XP_016865224 (OMIM: 616530) PREDICTED: probable AT ( 971) 545 66.6 7.9e-10
NP_001332905 (OMIM: 616530) probable ATP-dependent (1130) 545 66.6 8.8e-10
XP_016865222 (OMIM: 616530) PREDICTED: probable AT (1139) 545 66.6 8.9e-10
XP_011541888 (OMIM: 616530) PREDICTED: probable AT (1162) 545 66.6 9e-10
NP_001332904 (OMIM: 616530) probable ATP-dependent (1268) 545 66.7 9.5e-10
XP_016865220 (OMIM: 616530) PREDICTED: probable AT (1277) 545 66.7 9.6e-10
XP_011541884 (OMIM: 616530) PREDICTED: probable AT (1406) 545 66.7 1e-09
NP_073739 (OMIM: 616530) probable ATP-dependent RN (1430) 545 66.7 1e-09
XP_016865219 (OMIM: 616530) PREDICTED: probable AT (1430) 545 66.7 1e-09
>>NP_003578 (OMIM: 603405) putative pre-mRNA-splicing fa (1041 aa)
initn: 6778 init1: 6778 opt: 6778 Z-score: 3432.5 bits: 646.7 E(85289): 1.9e-184
Smith-Waterman score: 6778; 100.0% identity (100.0% similar) in 1041 aa overlap (1-1041:1-1041)
10 20 30 40 50 60
pF1KA0 MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCTSAEEFVQRLRDTDTLDLSGPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCTSAEEFVQRLRDTDTLDLSGPAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVSRAGSSLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVSRAGSSLQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKPESEDEWERTERERLQDLEERDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKPESEDEWERTERERLQDLEERDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 FAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKRER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 EKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRDLAREYRAAGEQEKLEATNRYHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRDLAREYRAAGEQEKLEATNRYHM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 PKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 ETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLII
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 EGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 IRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 RFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 QIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 QPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASAN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 QRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 LTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 NFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYR
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 TVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKE
970 980 990 1000 1010 1020
1030 1040
pF1KA0 LEDPHAKKMPKKIGKTREELG
:::::::::::::::::::::
NP_003 LEDPHAKKMPKKIGKTREELG
1030 1040
>>NP_001157711 (OMIM: 603405) putative pre-mRNA-splicing (981 aa)
initn: 6323 init1: 6323 opt: 6323 Z-score: 3203.9 bits: 604.4 E(85289): 1e-171
Smith-Waterman score: 6323; 100.0% identity (100.0% similar) in 973 aa overlap (69-1041:9-981)
40 50 60 70 80 90
pF1KA0 SAEEFVQRLRDTDTLDLSGPARDFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYR
::::::::::::::::::::::::::::::
NP_001 MSEDPRGPKVPRKAVVEKPARAAEREARALLEKNRSYR
10 20 30
100 110 120 130 140 150
pF1KA0 LLEDSEESSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLEDSEESSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KA0 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEED
100 110 120 130 140 150
220 230 240 250 260 270
pF1KA0 RKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRD
160 170 180 190 200 210
280 290 300 310 320 330
pF1KA0 LAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAAS
220 230 240 250 260 270
340 350 360 370 380 390
pF1KA0 LKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRS
280 290 300 310 320 330
400 410 420 430 440 450
pF1KA0 LPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAA
340 350 360 370 380 390
460 470 480 490 500 510
pF1KA0 MSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVM
400 410 420 430 440 450
520 530 540 550 560 570
pF1KA0 VDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFP
460 470 480 490 500 510
580 590 600 610 620 630
pF1KA0 VDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSK
520 530 540 550 560 570
640 650 660 670 680 690
pF1KA0 IRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQK
580 590 600 610 620 630
700 710 720 730 740 750
pF1KA0 SYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRT
640 650 660 670 680 690
760 770 780 790 800 810
pF1KA0 SLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAEL
700 710 720 730 740 750
820 830 840 850 860 870
pF1KA0 PVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDH
760 770 780 790 800 810
880 890 900 910 920 930
pF1KA0 LVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIR
820 830 840 850 860 870
940 950 960 970 980 990
pF1KA0 VRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMR
880 890 900 910 920 930
1000 1010 1020 1030 1040
pF1KA0 QVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
:::::::::::::::::::::::::::::::::::::::::::
NP_001 QVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
940 950 960 970 980
>>XP_011513240 (OMIM: 603405) PREDICTED: putative pre-mR (742 aa)
initn: 4866 init1: 4866 opt: 4866 Z-score: 2472.5 bits: 468.6 E(85289): 5.6e-131
Smith-Waterman score: 4866; 100.0% identity (100.0% similar) in 742 aa overlap (300-1041:1-742)
270 280 290 300 310 320
pF1KA0 LKYKRRVRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRW
::::::::::::::::::::::::::::::
XP_011 MPKETRGQPARAVDLVEEESGAPGEEQRRW
10 20 30
330 340 350 360 370 380
pF1KA0 EEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQK
40 50 60 70 80 90
390 400 410 420 430 440
pF1KA0 ESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIA
100 110 120 130 140 150
450 460 470 480 490 500
pF1KA0 CTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEP
160 170 180 190 200 210
510 520 530 540 550 560
pF1KA0 DLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPV
220 230 240 250 260 270
570 580 590 600 610 620
pF1KA0 FRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQ
280 290 300 310 320 330
630 640 650 660 670 680
pF1KA0 DRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYV
340 350 360 370 380 390
690 700 710 720 730 740
pF1KA0 LDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEE
400 410 420 430 440 450
750 760 770 780 790 800
pF1KA0 TTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELT
460 470 480 490 500 510
810 820 830 840 850 860
pF1KA0 TSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV
520 530 540 550 560 570
870 880 890 900 910 920
pF1KA0 NFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGL
580 590 600 610 620 630
930 940 950 960 970 980
pF1KA0 SSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHEL
640 650 660 670 680 690
990 1000 1010 1020 1030 1040
pF1KA0 VLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
700 710 720 730 740
>>XP_011513241 (OMIM: 603405) PREDICTED: putative pre-mR (742 aa)
initn: 4866 init1: 4866 opt: 4866 Z-score: 2472.5 bits: 468.6 E(85289): 5.6e-131
Smith-Waterman score: 4866; 100.0% identity (100.0% similar) in 742 aa overlap (300-1041:1-742)
270 280 290 300 310 320
pF1KA0 LKYKRRVRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRW
::::::::::::::::::::::::::::::
XP_011 MPKETRGQPARAVDLVEEESGAPGEEQRRW
10 20 30
330 340 350 360 370 380
pF1KA0 EEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQK
40 50 60 70 80 90
390 400 410 420 430 440
pF1KA0 ESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIA
100 110 120 130 140 150
450 460 470 480 490 500
pF1KA0 CTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEP
160 170 180 190 200 210
510 520 530 540 550 560
pF1KA0 DLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPV
220 230 240 250 260 270
570 580 590 600 610 620
pF1KA0 FRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQ
280 290 300 310 320 330
630 640 650 660 670 680
pF1KA0 DRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYV
340 350 360 370 380 390
690 700 710 720 730 740
pF1KA0 LDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEE
400 410 420 430 440 450
750 760 770 780 790 800
pF1KA0 TTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELT
460 470 480 490 500 510
810 820 830 840 850 860
pF1KA0 TSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV
520 530 540 550 560 570
870 880 890 900 910 920
pF1KA0 NFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGL
580 590 600 610 620 630
930 940 950 960 970 980
pF1KA0 SSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHEL
640 650 660 670 680 690
990 1000 1010 1020 1030 1040
pF1KA0 VLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
700 710 720 730 740
>>XP_011513242 (OMIM: 603405) PREDICTED: putative pre-mR (560 aa)
initn: 3474 init1: 3474 opt: 3474 Z-score: 1773.8 bits: 339.0 E(85289): 4.6e-92
Smith-Waterman score: 3474; 100.0% identity (100.0% similar) in 526 aa overlap (516-1041:35-560)
490 500 510 520 530 540
pF1KA0 CTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPE
::::::::::::::::::::::::::::::
XP_011 PAQECLMQMFLPIEPACFVEWLGTSPSQLGVVMVDEAHERTLHTDILFGLIKDVARFRPE
10 20 30 40 50 60
550 560 570 580 590 600
pF1KA0 LKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVT
70 80 90 100 110 120
610 620 630 640 650 660
pF1KA0 QPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPP
130 140 150 160 170 180
670 680 690 700 710 720
pF1KA0 GARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGR
190 200 210 220 230 240
730 740 750 760 770 780
pF1KA0 AGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPP
250 260 270 280 290 300
790 800 810 820 830 840
pF1KA0 YETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAA
310 320 330 340 350 360
850 860 870 880 890 900
pF1KA0 MLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQF
370 380 390 400 410 420
910 920 930 940 950 960
pF1KA0 RSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQ
430 440 450 460 470 480
970 980 990 1000 1010 1020
pF1KA0 QTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPH
490 500 510 520 530 540
1030 1040
pF1KA0 AKKMPKKIGKTREELG
::::::::::::::::
XP_011 AKKMPKKIGKTREELG
550 560
>>XP_011513243 (OMIM: 603405) PREDICTED: putative pre-mR (524 aa)
initn: 3464 init1: 3464 opt: 3464 Z-score: 1769.2 bits: 338.0 E(85289): 8.3e-92
Smith-Waterman score: 3464; 100.0% identity (100.0% similar) in 524 aa overlap (518-1041:1-524)
490 500 510 520 530 540
pF1KA0 SERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELK
::::::::::::::::::::::::::::::
XP_011 MVDEAHERTLHTDILFGLIKDVARFRPELK
10 20 30
550 560 570 580 590 600
pF1KA0 VLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQP
40 50 60 70 80 90
610 620 630 640 650 660
pF1KA0 PGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGA
100 110 120 130 140 150
670 680 690 700 710 720
pF1KA0 RKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAG
160 170 180 190 200 210
730 740 750 760 770 780
pF1KA0 RVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE
220 230 240 250 260 270
790 800 810 820 830 840
pF1KA0 TLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAML
280 290 300 310 320 330
850 860 870 880 890 900
pF1KA0 SVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRS
340 350 360 370 380 390
910 920 930 940 950 960
pF1KA0 MRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQT
400 410 420 430 440 450
970 980 990 1000 1010 1020
pF1KA0 VFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAK
460 470 480 490 500 510
1030 1040
pF1KA0 KMPKKIGKTREELG
::::::::::::::
XP_011 KMPKKIGKTREELG
520
>>NP_001309145 (OMIM: 600396) ATP-dependent RNA helicase (945 aa)
initn: 2591 init1: 1960 opt: 2590 Z-score: 1326.3 bits: 256.9 E(85289): 3.9e-67
Smith-Waterman score: 2604; 48.7% identity (75.0% similar) in 855 aa overlap (189-1039:108-924)
160 170 180 190 200 210
pF1KA0 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLER-SDKKAYEEAQKRLKMAEE
: . :. : : :: . .: :.. :.
NP_001 NLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWE--IKQMIAANV
80 90 100 110 120 130
220 230 240 250 260 270
pF1KA0 DRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYK--RR
: :.. ... : : . :. :::: ::..:: : : : .: . .. .
NP_001 LSKEEFPDFDEET--GILPKVDDEEDEDLEIELVEEEPPF----LRGHTKQSMDMSPIKI
140 150 160 170 180
280 290 300 310 320 330
pF1KA0 VRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLG
:.. :. ... : .: .. . : : .. : ...: .
NP_001 VKNPDGSLSQAAMMQSALAKERRELKQAQREA---------EMDSIPMGLNKHWVDPLPD
190 200 210 220 230 240
340 350 360 370 380 390
pF1KA0 AASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAV
: : . ::... .. . : . . :.. .: . . ::
NP_001 AE----GRQIAANMRGIGMM----PNDIPEWKKHAFGGNK------ASYGKKTQMSILEQ
250 260 270 280
400 410 420 430 440 450
pF1KA0 RRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRR
:.:::.. ..:.:. :. ..:.::. ::::::::::: ::: : :::..: ::.::::::
NP_001 RESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRG-KIGCTQPRR
290 300 310 320 330 340
460 470 480 490 500 510
pF1KA0 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS
::::::: ::..:.: ::.::::.:::::::: .::..:::::::::: : .:::..:.
NP_001 VAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYA
350 360 370 380 390 400
520 530 540 550 560 570
pF1KA0 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGR
..:.:::::::.:::.::::.: ... : ..:..:.:::.:...:: .: .::.: ::::
NP_001 IIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGR
410 420 430 440 450 460
580 590 600 610 620 630
pF1KA0 RFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRL
.::.:.::: ::.:::.: ...:.:::.:.:::::::::::::::..:::.: .: . :
NP_001 TYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSL
470 480 490 500 510 520
640 650 660 670 680 690
pF1KA0 GSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFC
: . ::..::.:. :::.::.:::.:.:::.::::.:::::::::::.:: ::.::::
NP_001 GPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
530 540 550 560 570 580
700 710 720 730 740 750
pF1KA0 KQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEI
::: :: .::...:.::: :.:.:.::::::::.. :::.:::: ::. :. :.::::
NP_001 KQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEI
590 600 610 620 630 640
760 770 780 790 800 810
pF1KA0 QRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKM
:::.:...:: ::..::.::. :::.: ::.:::. :.::::.::::. : :: ::.:
NP_001 QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM
650 660 670 680 690 700
820 830 840 850 860 870
pF1KA0 AELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG
::.:..::: ::.. : . .::::.::...::::.: .::::::: . ::. ...:
NP_001 AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE
710 720 730 740 750 760
880 890 900 910 920 930
pF1KA0 GDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGD
::::.:: ::..: .. .:. ::::::.: ::.:::.:.:.:. :...: .. . :: .
NP_001 GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS
770 780 790 800 810 820
940 950 960 970 980 990
pF1KA0 YIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK
.::.::: .:.: ..:. . ::::. .::.:.:::.:.::..::.:..:::::::::
NP_001 TVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTK
830 840 850 860 870 880
1000 1010 1020 1030 1040
pF1KA0 EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
:.::.: :. ::.: :: ..:.. :: :. :. . : :
NP_001 EYMREVTTIDPRWLVEFAPAFFKVS---DP--TKLSKQKKQQRLEPLYNRYEEPNAWRIS
890 900 910 920 930
NP_001 RAFRRR
940
>>NP_001309146 (OMIM: 600396) ATP-dependent RNA helicase (1129 aa)
initn: 2652 init1: 1960 opt: 2590 Z-score: 1325.3 bits: 257.0 E(85289): 4.4e-67
Smith-Waterman score: 2604; 48.7% identity (75.0% similar) in 855 aa overlap (189-1039:292-1108)
160 170 180 190 200 210
pF1KA0 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLER-SDKKAYEEAQKRLKMAEE
: . :. : : :: . .: :.. :.
NP_001 NLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWE--IKQMIAANV
270 280 290 300 310
220 230 240 250 260 270
pF1KA0 DRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYK--RR
: :.. ... : : . :. :::: ::..:: : : : .: . .. .
NP_001 LSKEEFPDFDEET--GILPKVDDEEDEDLEIELVEEEPPF----LRGHTKQSMDMSPIKI
320 330 340 350 360 370
280 290 300 310 320 330
pF1KA0 VRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLG
:.. :. ... : .: .. . : : .. : ...: .
NP_001 VKNPDGSLSQAAMMQSALAKERRELKQAQREA---------EMDSIPMGLNKHWVDPLPD
380 390 400 410 420
340 350 360 370 380 390
pF1KA0 AASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAV
: : . ::... .. . : . . :.. .: . . ::
NP_001 AE----GRQIAANMRGIGMM----PNDIPEWKKHAFGGNK------ASYGKKTQMSILEQ
430 440 450 460 470
400 410 420 430 440 450
pF1KA0 RRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRR
:.:::.. ..:.:. :. ..:.::. ::::::::::: ::: : :::..: ::.::::::
NP_001 RESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRG-KIGCTQPRR
480 490 500 510 520
460 470 480 490 500 510
pF1KA0 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS
::::::: ::..:.: ::.::::.:::::::: .::..:::::::::: : .:::..:.
NP_001 VAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYA
530 540 550 560 570 580
520 530 540 550 560 570
pF1KA0 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGR
..:.:::::::.:::.::::.: ... : ..:..:.:::.:...:: .: .::.: ::::
NP_001 IIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGR
590 600 610 620 630 640
580 590 600 610 620 630
pF1KA0 RFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRL
.::.:.::: ::.:::.: ...:.:::.:.:::::::::::::::..:::.: .: . :
NP_001 TYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSL
650 660 670 680 690 700
640 650 660 670 680 690
pF1KA0 GSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFC
: . ::..::.:. :::.::.:::.:.:::.::::.:::::::::::.:: ::.::::
NP_001 GPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
710 720 730 740 750 760
700 710 720 730 740 750
pF1KA0 KQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEI
::: :: .::...:.::: :.:.:.::::::::.. :::.:::: ::. :. :.::::
NP_001 KQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEI
770 780 790 800 810 820
760 770 780 790 800 810
pF1KA0 QRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKM
:::.:...:: ::..::.::. :::.: ::.:::. :.::::.::::. : :: ::.:
NP_001 QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM
830 840 850 860 870 880
820 830 840 850 860 870
pF1KA0 AELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG
::.:..::: ::.. : . .::::.::...::::.: .::::::: . ::. ...:
NP_001 AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE
890 900 910 920 930 940
880 890 900 910 920 930
pF1KA0 GDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGD
::::.:: ::..: .. .:. ::::::.: ::.:::.:.:.:. :...: .. . :: .
NP_001 GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS
950 960 970 980 990 1000
940 950 960 970 980 990
pF1KA0 YIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK
.::.::: .:.: ..:. . ::::. .::.:.:::.:.::..::.:..:::::::::
NP_001 TVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTK
1010 1020 1030 1040 1050 1060
1000 1010 1020 1030 1040
pF1KA0 EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
:.::.: :. ::.: :: ..:.. :: :. :. . : :
NP_001 EYMREVTTIDPRWLVEFAPAFFKVS---DP--TKLSKQKKQQRLEPLYNRYEEPNAWRIS
1070 1080 1090 1100 1110 1120
NP_001 RAFRRR
>>NP_001309150 (OMIM: 600396) ATP-dependent RNA helicase (1218 aa)
initn: 2652 init1: 1960 opt: 2590 Z-score: 1324.9 bits: 257.0 E(85289): 4.7e-67
Smith-Waterman score: 2604; 48.7% identity (75.0% similar) in 855 aa overlap (189-1039:381-1197)
160 170 180 190 200 210
pF1KA0 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLER-SDKKAYEEAQKRLKMAEE
: . :. : : :: . .: :.. :.
NP_001 NLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWE--IKQMIAANV
360 370 380 390 400
220 230 240 250 260 270
pF1KA0 DRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYK--RR
: :.. ... : : . :. :::: ::..:: : : : .: . .. .
NP_001 LSKEEFPDFDEET--GILPKVDDEEDEDLEIELVEEEPPF----LRGHTKQSMDMSPIKI
410 420 430 440 450 460
280 290 300 310 320 330
pF1KA0 VRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLG
:.. :. ... : .: .. . : : .. : ...: .
NP_001 VKNPDGSLSQAAMMQSALAKERRELKQAQREA---------EMDSIPMGLNKHWVDPLPD
470 480 490 500 510
340 350 360 370 380 390
pF1KA0 AASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAV
: : . ::... .. . : . . :.. .: . . ::
NP_001 AE----GRQIAANMRGIGMM----PNDIPEWKKHAFGGNK------ASYGKKTQMSILEQ
520 530 540 550
400 410 420 430 440 450
pF1KA0 RRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRR
:.:::.. ..:.:. :. ..:.::. ::::::::::: ::: : :::..: ::.::::::
NP_001 RESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRG-KIGCTQPRR
560 570 580 590 600 610
460 470 480 490 500 510
pF1KA0 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS
::::::: ::..:.: ::.::::.:::::::: .::..:::::::::: : .:::..:.
NP_001 VAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYA
620 630 640 650 660 670
520 530 540 550 560 570
pF1KA0 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGR
..:.:::::::.:::.::::.: ... : ..:..:.:::.:...:: .: .::.: ::::
NP_001 IIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGR
680 690 700 710 720 730
580 590 600 610 620 630
pF1KA0 RFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRL
.::.:.::: ::.:::.: ...:.:::.:.:::::::::::::::..:::.: .: . :
NP_001 TYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSL
740 750 760 770 780 790
640 650 660 670 680 690
pF1KA0 GSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFC
: . ::..::.:. :::.::.:::.:.:::.::::.:::::::::::.:: ::.::::
NP_001 GPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
800 810 820 830 840 850
700 710 720 730 740 750
pF1KA0 KQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEI
::: :: .::...:.::: :.:.:.::::::::.. :::.:::: ::. :. :.::::
NP_001 KQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEI
860 870 880 890 900 910
760 770 780 790 800 810
pF1KA0 QRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKM
:::.:...:: ::..::.::. :::.: ::.:::. :.::::.::::. : :: ::.:
NP_001 QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM
920 930 940 950 960 970
820 830 840 850 860 870
pF1KA0 AELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG
::.:..::: ::.. : . .::::.::...::::.: .::::::: . ::. ...:
NP_001 AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE
980 990 1000 1010 1020 1030
880 890 900 910 920 930
pF1KA0 GDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGD
::::.:: ::..: .. .:. ::::::.: ::.:::.:.:.:. :...: .. . :: .
NP_001 GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS
1040 1050 1060 1070 1080 1090
940 950 960 970 980 990
pF1KA0 YIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK
.::.::: .:.: ..:. . ::::. .::.:.:::.:.::..::.:..:::::::::
NP_001 TVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTK
1100 1110 1120 1130 1140 1150
1000 1010 1020 1030 1040
pF1KA0 EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
:.::.: :. ::.: :: ..:.. :: :. :. . : :
NP_001 EYMREVTTIDPRWLVEFAPAFFKVS---DP--TKLSKQKKQQRLEPLYNRYEEPNAWRIS
1160 1170 1180 1190 1200 1210
NP_001 RAFRRR
>>NP_004932 (OMIM: 600396) ATP-dependent RNA helicase DH (1220 aa)
initn: 2652 init1: 1960 opt: 2590 Z-score: 1324.9 bits: 257.0 E(85289): 4.7e-67
Smith-Waterman score: 2604; 48.7% identity (75.0% similar) in 855 aa overlap (189-1039:383-1199)
160 170 180 190 200 210
pF1KA0 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLER-SDKKAYEEAQKRLKMAEE
: . :. : : :: . .: :.. :.
NP_004 NLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWE--IKQMIAANV
360 370 380 390 400 410
220 230 240 250 260 270
pF1KA0 DRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYK--RR
: :.. ... : : . :. :::: ::..:: : : : .: . .. .
NP_004 LSKEEFPDFDEET--GILPKVDDEEDEDLEIELVEEEPPF----LRGHTKQSMDMSPIKI
420 430 440 450 460
280 290 300 310 320 330
pF1KA0 VRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLG
:.. :. ... : .: .. . : : .. : ...: .
NP_004 VKNPDGSLSQAAMMQSALAKERRELKQAQREA---------EMDSIPMGLNKHWVDPLPD
470 480 490 500 510
340 350 360 370 380 390
pF1KA0 AASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAV
: : . ::... .. . : . . :.. .: . . ::
NP_004 AE----GRQIAANMRGIGMM----PNDIPEWKKHAFGGNK------ASYGKKTQMSILEQ
520 530 540 550 560
400 410 420 430 440 450
pF1KA0 RRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRR
:.:::.. ..:.:. :. ..:.::. ::::::::::: ::: : :::..: ::.::::::
NP_004 RESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRG-KIGCTQPRR
570 580 590 600 610 620
460 470 480 490 500 510
pF1KA0 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS
::::::: ::..:.: ::.::::.:::::::: .::..:::::::::: : .:::..:.
NP_004 VAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYA
630 640 650 660 670 680
520 530 540 550 560 570
pF1KA0 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGR
..:.:::::::.:::.::::.: ... : ..:..:.:::.:...:: .: .::.: ::::
NP_004 IIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGR
690 700 710 720 730 740
580 590 600 610 620 630
pF1KA0 RFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRL
.::.:.::: ::.:::.: ...:.:::.:.:::::::::::::::..:::.: .: . :
NP_004 TYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSL
750 760 770 780 790 800
640 650 660 670 680 690
pF1KA0 GSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFC
: . ::..::.:. :::.::.:::.:.:::.::::.:::::::::::.:: ::.::::
NP_004 GPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
810 820 830 840 850 860
700 710 720 730 740 750
pF1KA0 KQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEI
::: :: .::...:.::: :.:.:.::::::::.. :::.:::: ::. :. :.::::
NP_004 KQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEI
870 880 890 900 910 920
760 770 780 790 800 810
pF1KA0 QRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKM
:::.:...:: ::..::.::. :::.: ::.:::. :.::::.::::. : :: ::.:
NP_004 QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM
930 940 950 960 970 980
820 830 840 850 860 870
pF1KA0 AELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG
::.:..::: ::.. : . .::::.::...::::.: .::::::: . ::. ...:
NP_004 AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE
990 1000 1010 1020 1030
880 890 900 910 920 930
pF1KA0 GDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGD
::::.:: ::..: .. .:. ::::::.: ::.:::.:.:.:. :...: .. . :: .
NP_004 GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS
1040 1050 1060 1070 1080 1090
940 950 960 970 980 990
pF1KA0 YIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK
.::.::: .:.: ..:. . ::::. .::.:.:::.:.::..::.:..:::::::::
NP_004 TVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTK
1100 1110 1120 1130 1140 1150
1000 1010 1020 1030 1040
pF1KA0 EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG
:.::.: :. ::.: :: ..:.. :: :. :. . : :
NP_004 EYMREVTTIDPRWLVEFAPAFFKVS---DP--TKLSKQKKQQRLEPLYNRYEEPNAWRIS
1160 1170 1180 1190 1200 1210
NP_004 RAFRRR
1220
1041 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:45:19 2016 done: Thu Nov 3 09:45:22 2016
Total Scan time: 16.600 Total Display time: 0.370
Function used was FASTA [36.3.4 Apr, 2011]