Result of FASTA (ccds) for
pF1KA0546
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0546, 1910 aa
1>>>pF1KA0546 1910 - 1910 aa - 1910 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.1482+/-0.00116; mu= -3.0749+/- 0.070
mean_var=483.1613+/-96.552, 0's: 0 Z-trim(114.5): 13 B-trim: 0 in 0/55
Lambda= 0.058348
statistics sampled from 15030 (15036) to 15030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.462), width: 16
Scan time: 5.450
The best scores are: opt bits E(32554)
CCDS41813.1 ZFC3H1 gene_id:196441|Hs108|chr12 (1989) 12646 1080.8 0
>>CCDS41813.1 ZFC3H1 gene_id:196441|Hs108|chr12 (1989 aa)
initn: 12916 init1: 12646 opt: 12646 Z-score: 5768.6 bits: 1080.8 E(32554): 0
Smith-Waterman score: 12646; 99.9% identity (100.0% similar) in 1910 aa overlap (1-1910:1-1910)
10 20 30 40 50 60
pF1KA0 MATADTPAPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSSSSGGGLLPYPRRRPPHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MATADTPAPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSSSSGGGLLPYPRRRPPHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 ARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGPSSYRPKEPFRSHPPSVRMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGPSSYRPKEPFRSHPPSVRMP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPLGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPLGGGA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 GSGFSSSQSWREPSPPRKSSKSFGRSPSRKQNYSSKNENCVEETFEDLLLKYKQIQLELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSGFSSSQSWREPSPPRKSSKSFGRSPSRKQNYSSKNENCVEETFEDLLLKYKQIQLELE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 CINKDEKLALSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CINKDEKLALSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LKPLRQKLTLPGDKNRLKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLTRRISTSDILSEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKPLRQKLTLPGDKNRLKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLTRRISTSDILSEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 KLGEDEEELSELQLRLLALQSASKKWQQKEQQVMKESKEKLTKTKTVQQKVKTSTKTHSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLGEDEEELSELQLRLLALQSASKKWQQKEQQVMKESKEKLTKTKTVQQKVKTSTKTHSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 KKVSTTAKQALRKQQTKAWKKLQQQKEQERQKEEDQRKQAEEEERRKREEEIRKIRDLSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KKVSTTAKQALRKQQTKAWKKLQQQKEQERQKEEDQRKQAEEEERRKREEEIRKIRDLSN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 QEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPTDSGGGIYQYDNYEEVAMDTDSETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPTDSGGGIYQYDNYEEVAMDTDSETS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SPAPSPVQPPFFSECSLGYFSPAPSLSLPPPPQVSSLPPLSQPYVEGLCVSLEPLPPLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SPAPSPVQPPFFSECSLGYFSPAPSLSLPPPPQVSSLPPLSQPYVEGLCVSLEPLPPLPP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 LPPLPPEDPEQPPKPPFADEEEEEEMLLREELLKSLANKRAFKPEETSSNSDPPSPPVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPPLPPEDPEQPPKPPFADEEEEEEMLLREELLKSLANKRAFKPEETSSNSDPPSPPVLN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 NSHPVPRSNLSIVSINTVSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NSHPVPRSNLSIVSINTVSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 GEASKSTNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GEASKSTNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LKEEIANREKQRLIKSDQLKTSSSSPANSDVEIDGIGRIAMVTKQVTDAESKLKKHRILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKEEIANREKQRLIKSDQLKTSSSSPANSDVEIDGIGRIAMVTKQVTDAESKLKKHRILL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 MKDESVLKNLVQQEAKKKESVRNAEAKITKLTEQLQATEKILNVNRMFLKKLQEQIHRVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MKDESVLKNLVQQEAKKKESVRNAEAKITKLTEQLQATEKILNVNRMFLKKLQEQIHRVQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 QRVTIKKALTLKYGEELARAKAVASKEIGKRKLEQDRFGPNKMMRLDSSPVSSPRKHSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QRVTIKKALTLKYGEELARAKAVASKEIGKRKLEQDRFGPNKMMRLDSSPVSSPRKHSAE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 LIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNISPVVEEEPEFSLPQPSLHDLTQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNISPVVEEEPEFSLPQPSLHDLTQD
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 KLTLDTEENDVDDEILSGSSRERRRSFLESNYFTKPNLKHTDTANKECINKLNKNTVEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLTLDTEENDVDDEILSGSSRERRRSFLESNYFTKPNLKHTDTANKECINKLNKNTVEKP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 ELFLGLKIGELQKLYSKADSLKQLILKTTTGITEKVLHGQEISVDVDFVTAQSKTMEVKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELFLGLKIGELQKLYSKADSLKQLILKTTTGITEKVLHGQEISVDVDFVTAQSKTMEVKP
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 CPFRPYHSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPDQCFCRFDLTGTCNDDDCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CPFRPYHSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPDQCFCRFDLTGTCNDDDCQ
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 WQHIQDYTLSRKQLFQDILSYNLSLIGCAETSTNEEITASAEKYVEKLFGVNKDRMSMDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WQHIQDYTLSRKQLFQDILSYNLSLIGCAETSTNEEITASAEKYVEKLFGVNKDRMSMDQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 MAVLLVSNINESKGHTPPFTTYKDKRKWKPKFWRKPISDNSFSSDEEQSTGPIKYAFQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAVLLVSNINESKGHTPPFTTYKDKRKWKPKFWRKPISDNSFSSDEEQSTGPIKYAFQPE
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 NQINVPALDTVVTPDDVRYFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NQINVPALDTVVTPDDVRYFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 ESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWTF
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 LHLESTFEEKDYVCERMLEFLMGAAKQETSNILSFQLLEALLFRVQLHIFTGRCQSALAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LHLESTFEEKDYVCERMLEFLMGAAKQETSNILSFQLLEALLFRVQLHIFTGRCQSALAI
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 LQNALKSANDGIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQNALKSANDGIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFV
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 MPWQAVQDVKTNPDMLLAVFEDAVKACTDESLAVEERIEACLPLYTNMIALHQLLERYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPWQAVQDVKTNPDMLLAVFEDAVKACTDESLAVEERIEACLPLYTNMIALHQLLERYEA
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 AMELCKSLLESCPINCQLLEALVALYLQTNQHDKARAVWLTAFEKNPQNAEVFYHMCKFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AMELCKSLLESCPINCQLLEALVALYLQTNQHDKARAVWLTAFEKNPQNAEVFYHMCKFF
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 ILQNRGDNLLPFLRKFIASFFKPGFEKYNNLDLFRYLLNIPGPIDIPSRLCKGNFDDDMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILQNRGDNLLPFLRKFIASFFKPGFEKYNNLDLFRYLLNIPGPIDIPSRLCKGNFDDDMF
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 NHQVPYLWLIYCLCHPLQSSIKETVEAYEAALGVAMRCDIVQKIWMDYLVFANNRAAGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NHQVPYLWLIYCLCHPLQSSIKETVEAYEAALGVAMRCDIVQKIWMDYLVFANNRAAGSR
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 NKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNYEFHNRVIFFYLSCVPKTQHSKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNYEFHNRVIFFYLSCVPKTQHSKTL
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910
pF1KA0 ERFCSVMPANSGLALRLLQHEWEESNVQILKLQAKMFTYNIPTCLATWKM
:::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS41 ERFCSVMPANSGLALRLLQHEWEESNVQILKLQAKMFTYNIPTCLATWKIAIAAEIVLKG
1870 1880 1890 1900 1910 1920
CCDS41 QREVHRLYQRALQKLPLCASLWKDQLLFEASEGGKTDNLRKLVSKCQEIGVSLNELLNLN
1930 1940 1950 1960 1970 1980
1910 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:15:07 2016 done: Wed Nov 2 19:15:08 2016
Total Scan time: 5.450 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]