Result of FASTA (ccds) for
pF1KA0419
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0419, 991 aa
1>>>pF1KA0419 991 - 991 aa - 991 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2418+/-0.00132; mu= 8.6501+/- 0.080
mean_var=171.1842+/-34.800, 0's: 0 Z-trim(106.0): 22 B-trim: 175 in 2/50
Lambda= 0.098026
statistics sampled from 8726 (8730) to 8726 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.268), width: 16
Scan time: 4.550
The best scores are: opt bits E(32554)
CCDS10579.1 CCP110 gene_id:9738|Hs108|chr16 ( 991) 6412 920.2 0
CCDS55992.1 CCP110 gene_id:9738|Hs108|chr16 (1012) 6241 896.0 0
>>CCDS10579.1 CCP110 gene_id:9738|Hs108|chr16 (991 aa)
initn: 6412 init1: 6412 opt: 6412 Z-score: 4910.9 bits: 920.2 E(32554): 0
Smith-Waterman score: 6412; 99.8% identity (100.0% similar) in 991 aa overlap (1-991:1-991)
10 20 30 40 50 60
pF1KA0 MEEYEKFCEKSLARIQEASLSTESFLPAQSESISLIRFHGVAILSPLLNIEKRKEMQQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEEYEKFCEKSLARIQEASLSTESFLPAQSESISLIRFHGVAILSPLLNIEKRKEMQQEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QKALDVEARKQVNRKKALLTRVQEILDNVQVRKAPNASDFDQWEMETVYSNSEVRNLNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QKALDVEARKQVNRKKALLTRVQEILDNVQVRKAPNASDFDQWEMETVYSNSEVRNLNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 ATFPNSFPSHTEHSTAAKLDKIAGILPLDNEDQCKTDGIDLARDSEGFNSPKQCDSSNIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATFPNSFPSHTEHSTAAKLDKIAGILPLDNEDQCKTDGIDLARDSEGFNSPKQCDSSNIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 HVENEAFPKTSSATPQETLISDGPFSVNEQQDLPLLAEVIPDPYVMSLQNLMKKSKEYIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HVENEAFPKTSSATPQETLISDGPFSVNEQQDLPLLAEVIPDPYVMSLQNLMKKSKEYIE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 REQSRRSLRGSMNRIVNESHLDKEHDAVEVADCVKEKGQLTGKHCVSVIPDKPSLNKSNV
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REQSRRSLRGSINRIVNESHLDKEHDAVEVADCVKEKGQLTGKHCVSVIPDKPSLNKSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LLQGASTQASSMSMPVLASFSKVDIPIRTGHPTVLESNSDFKVIPTIVTENNVIKSLTGS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS10 LLQGASTQASSMSMPVLASFSKVDIPIRTGHPTVLESNSDFKVIPTFVTENNVIKSLTGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 YAKLPSPEPSMSPKMHRRRSRTSSACHILINNPINACELSPKGKEQAMDLIIQDTDENTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YAKLPSPEPSMSPKMHRRRSRTSSACHILINNPINACELSPKGKEQAMDLIIQDTDENTN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 VPEIMPKLPTDLAGVCSSKVYVGKNTSEVKEDVVLGKSNQVCQSSGNHLENKVTHGLVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VPEIMPKLPTDLAGVCSSKVYVGKNTSEVKEDVVLGKSNQVCQSSGNHLENKVTHGLVTV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 EGQLTSDERGAHIMNSTCAAMPKLHEPYASSQCIASPNFGTVSGLKPASMLEKNCSLQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGQLTSDERGAHIMNSTCAAMPKLHEPYASSQCIASPNFGTVSGLKPASMLEKNCSLQTE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 LNKSYDVKNPSPLLMQNQNTRQQMDTPMVSCGNEQFLDNSFEKVKRRLDLDIDGLQKENC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LNKSYDVKNPSPLLMQNQNTRQQMDTPMVSCGNEQFLDNSFEKVKRRLDLDIDGLQKENC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PYVITSGITEQERQHLPEKRYPKGSGFVNKNKMLGTSSKESEELLKSKMLAFEEMRKRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PYVITSGITEQERQHLPEKRYPKGSGFVNKNKMLGTSSKESEELLKSKMLAFEEMRKRLE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EQHAQQLSLLIAEQEREQERLQKEIEEQEKMLKEKKAMTAEASELDINNAVELEWRKISD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EQHAQQLSLLIAEQEREQERLQKEIEEQEKMLKEKKAMTAEASELDINNAVELEWRKISD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SSLLETMLSQADSLHTSNSNSSGFTNSAMQYSFVSANEAPFYLWGSSTSGLTKLSVTRPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSLLETMLSQADSLHTSNSNSSGFTNSAMQYSFVSANEAPFYLWGSSTSGLTKLSVTRPF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 GRAKTRWSQVFSLEIQAKFNKITAVAKGFLTRRLMQTDKLKQLRQTVKDTMEFIRSFQSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GRAKTRWSQVFSLEIQAKFNKITAVAKGFLTRRLMQTDKLKQLRQTVKDTMEFIRSFQSE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 APLKRGIVSAQDASLQERVLAQLRAALYGIHDIFFVMDAAERMSILHHDREVRKEKMLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APLKRGIVSAQDASLQERVLAQLRAALYGIHDIFFVMDAAERMSILHHDREVRKEKMLRQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 MDKMKSPRVALSAATQKSLDRKKYMKAAEMGMPNKKFLVKQNPSETRVLQPNQGQNAPVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDKMKSPRVALSAATQKSLDRKKYMKAAEMGMPNKKFLVKQNPSETRVLQPNQGQNAPVH
910 920 930 940 950 960
970 980 990
pF1KA0 RLLSRQGSICRKNPKKAAKCCDNLRRQHSLG
:::::::::::::::::::::::::::::::
CCDS10 RLLSRQGSICRKNPKKAAKCCDNLRRQHSLG
970 980 990
>>CCDS55992.1 CCP110 gene_id:9738|Hs108|chr16 (1012 aa)
initn: 6238 init1: 6238 opt: 6241 Z-score: 4780.1 bits: 896.0 E(32554): 0
Smith-Waterman score: 6241; 98.1% identity (98.9% similar) in 989 aa overlap (1-989:1-984)
10 20 30 40 50 60
pF1KA0 MEEYEKFCEKSLARIQEASLSTESFLPAQSESISLIRFHGVAILSPLLNIEKRKEMQQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEEYEKFCEKSLARIQEASLSTESFLPAQSESISLIRFHGVAILSPLLNIEKRKEMQQEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QKALDVEARKQVNRKKALLTRVQEILDNVQVRKAPNASDFDQWEMETVYSNSEVRNLNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKALDVEARKQVNRKKALLTRVQEILDNVQVRKAPNASDFDQWEMETVYSNSEVRNLNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 ATFPNSFPSHTEHSTAAKLDKIAGILPLDNEDQCKTDGIDLARDSEGFNSPKQCDSSNIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ATFPNSFPSHTEHSTAAKLDKIAGILPLDNEDQCKTDGIDLARDSEGFNSPKQCDSSNIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 HVENEAFPKTSSATPQETLISDGPFSVNEQQDLPLLAEVIPDPYVMSLQNLMKKSKEYIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HVENEAFPKTSSATPQETLISDGPFSVNEQQDLPLLAEVIPDPYVMSLQNLMKKSKEYIE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 REQSRRSLRGSMNRIVNESHLDKEHDAVEVADCVKEKGQLTGKHCVSVIPDKPSLNKSNV
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 REQSRRSLRGSINRIVNESHLDKEHDAVEVADCVKEKGQLTGKHCVSVIPDKPSLNKSNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LLQGASTQASSMSMPVLASFSKVDIPIRTGHPTVLESNSDFKVIPTIVTENNVIKSLTGS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS55 LLQGASTQASSMSMPVLASFSKVDIPIRTGHPTVLESNSDFKVIPTFVTENNVIKSLTGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 YAKLPSPEPSMSPKMHRRRSRTSSACHILINNPINACELSPKGKEQAMDLIIQDTDENTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YAKLPSPEPSMSPKMHRRRSRTSSACHILINNPINACELSPKGKEQAMDLIIQDTDENTN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 VPEIMPKLPTDLAGVCSSKVYVGKNTSEVKEDVVLGKSNQVCQSSGNHLENKVTHGLVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VPEIMPKLPTDLAGVCSSKVYVGKNTSEVKEDVVLGKSNQVCQSSGNHLENKVTHGLVTV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 EGQLTSDERGAHIMNSTCAAMPKLHEPYASSQCIASPNFGTVSGLKPASMLEKNCSLQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EGQLTSDERGAHIMNSTCAAMPKLHEPYASSQCIASPNFGTVSGLKPASMLEKNCSLQTE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 LNKSYDVKNPSPLLMQNQNTRQQMDTPMVSCGNEQFLDNSFEKVKRRLDLDIDGLQKENC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LNKSYDVKNPSPLLMQNQNTRQQMDTPMVSCGNEQFLDNSFEKVKRRLDLDIDGLQKENC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PYVITSGITEQERQHLPEKRYPKGSGFVNKNKMLGTSSKESEELLKSKMLAFEEMRKRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PYVITSGITEQERQHLPEKRYPKGSGFVNKNKMLGTSSKESEELLKSKMLAFEEMRKRLE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EQHAQQLSLLIAEQEREQERLQKEIEEQEKMLKEKKAMTAEASELDINNAVELEWRKISD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EQHAQQLSLLIAEQEREQERLQKEIEEQEKMLKEKKAMTAEASELDINNAVELEWRKISD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SSLLETMLSQADSLHTSNSNSSGFTNSAMQYSFVSANEAPFYLWGSSTSGLTKLSVTRPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSLLETMLSQADSLHTSNSNSSGFTNSAMQYSFVSANEAPFYLWGSSTSGLTKLSVTRPF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 GRAKTRWSQVFSLEIQAKFNKITAVAKGFLTRRLMQTDKLKQLRQTVKDTMEFIRSFQSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GRAKTRWSQVFSLEIQAKFNKITAVAKGFLTRRLMQTDKLKQLRQTVKDTMEFIRSFQSE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 APLKRGIVSAQDASLQERVLAQLRAALYGIHDIFFVMDAAERMSILHHDREVRKEKMLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 APLKRGIVSAQDASLQERVLAQLRAALYGIHDIFFVMDAAERMSILHHDREVRKEKMLRQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 MDKMKSPRVALSAATQKSLDRKKYMKAAEMGMPNKKFLVKQNPSETRVLQPNQGQNAPVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDKMKSPRVALSAATQKSLDRKKYMKAAEMGMPNKKFLVKQNPSETRVLQPNQGQNAPVH
910 920 930 940 950 960
970 980 990
pF1KA0 RLLSRQGSICRKNPKKAAKCCDNLRRQHSLG
:::::::. :: ..: . :.. :
CCDS55 RLLSRQGT-----PKTSVKGVVQNRQKPSQSRVPNRVPVSGVYAGKIQRKRPNVATI
970 980 990 1000 1010
991 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:36:53 2016 done: Thu Nov 3 09:36:54 2016
Total Scan time: 4.550 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]