Result of FASTA (ccds) for
pF1KA0361
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0361, 1338 aa
1>>>pF1KA0361 1338 - 1338 aa - 1338 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1581+/-0.000816; mu= 19.7326+/- 0.050
mean_var=92.9112+/-18.954, 0's: 0 Z-trim(109.7): 7 B-trim: 508 in 1/52
Lambda= 0.133058
statistics sampled from 11066 (11070) to 11066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.34), width: 16
Scan time: 5.290
The best scores are: opt bits E(32554)
CCDS11136.1 PFAS gene_id:5198|Hs108|chr17 (1338) 9149 1767.1 0
>>CCDS11136.1 PFAS gene_id:5198|Hs108|chr17 (1338 aa)
initn: 9149 init1: 9149 opt: 9149 Z-score: 9483.5 bits: 1767.1 E(32554): 0
Smith-Waterman score: 9149; 99.7% identity (99.7% similar) in 1338 aa overlap (1-1338:1-1338)
10 20 30 40 50 60
pF1KA0 MSPVLHFYVRPSGHEGAASGHTRRKLQGKLPELQGVETELCYNVNWTAEALPSAEETKKL
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS11 MSPVLHFYVRPSGHEGAAPGHTRRKLQGKLPELQGVETELCYNVNWTAEALPSAEETKKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MWLFGCPLLLDDVARESWLLPGSNDLLLEVGPRLNFSTPTSTNIVSVCRATGLGPVDRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MWLFGCPLLLDDVARESWLLPGSNDLLLEVGPRLNFSTPTSTNIVSVCRATGLGPVDRVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 TTRRYRLSFAHPPSAEVEAIALATLHDRMTEQHFPHPIQSFSPESMPEPLNGPINILGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTRRYRLSFAHPPSAEVEAIALATLHDRMTEQHFPHPIQSFSPESMPEPLNGPINILGEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 RLALEKANQELGLALDSWDLDFYTKRFQELQRNPSTVEAFDLAQSNSEHSRHWFFKGQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLALEKANQELGLALDSWDLDFYTKRFQELQRNPSTVEAFDLAQSNSEHSRHWFFKGQLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VDGQKLVHSLFESIMSTQESSNPNNVLKFCDNSSAIQGKEVRFLRPEDPTRPSRFQQQQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDGQKLVHSLFESIMSTQESSNPNNVLKFCDNSSAIQGKEVRFLRPEDPTRPSRFQQQQG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LRHVVFTAETHNFPTGVCPFSGATTGTGGRIRDVQCTGRGAHVVAGTAGYCFGNLHIPGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRHVVFTAETHNFPTGVCPFSGATTGTGGRIRDVQCTGRGAHVVAGTAGYCFGNLHIPGY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 NLPWEDLSFQYPGNFARPLEVAIEASNGASDYGNKFGEPVLAGFARSLGLQLPDGQRREW
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLPWEDPSFQYPGNFARPLEVAIEASNGASDYGNKFGEPVLAGFARSLGLQLPDGQRREW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IKPIMFSGGIGSMEADHISKEAPEPGMEVVKVGGPVYRIGVGGGAASSVQVQGDNTSDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKPIMFSGGIGSMEADHISKEAPEPGMEVVKVGGPVYRIGVGGGAASSVQVQGDNTSDLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 FGAVQRGDPEMEQKMNRVIRACVEAPKGNPICSLHDQGAGGNGNVLKELSDPAGAIIYTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FGAVQRGDPEMEQKMNRVIRACVEAPKGNPICSLHDQGAGGNGNVLKELSDPAGAIIYTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 RFQLGDPTLNALEIWGAEYQESNALLLRSPNRDFLTHVSARERCPACFVGTITGDRRIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RFQLGDPTLNALEIWGAEYQESNALLLRSPNRDFLTHVSARERCPACFVGTITGDRRIVL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 VDDRECPVRRNGQGDAPPTPPPTPVDLELEWVLGKMPRKEFFLQRKPPMLQPLALPPGLS
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS11 VDDRECPVRRNGQGDAPPTPLPTPVDLELEWVLGKMPRKEFFLQRKPPMLQPLALPPGLS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 VHQALERVLRLPAVASKRYLTNKVDRSVGGLVAQQQCVGPLQTPLADVAVVALSHEELIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VHQALERVLRLPAVASKRYLTNKVDRSVGGLVAQQQCVGPLQTPLADVAVVALSHEELIG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 AATALGEQPVKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAAKLPGEGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AATALGEQPVKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAAKLPGEGAA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LADACEAMVAVMAALGVAVDGGKDSLSMAARVGTETVRAPGSLVISAYAVCPDITATVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LADACEAMVAVMAALGVAVDGGKDSLSMAARVGTETVRAPGSLVISAYAVCPDITATVTP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 DLKHPEGRGHLLYVALSPGQHRLGGTALAQCFSQLGEHPPDLDLPENLVRAFSITQGLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLKHPEGRGHLLYVALSPGQHRLGGTALAQCFSQLGEHPPDLDLPENLVRAFSITQGLLK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 DRLLCSGHDVSDGGLVTCLLEMAFAGNCGLQVDVPVPRVDVLSVLFAEEPGLVLEVQEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DRLLCSGHDVSDGGLVTCLLEMAFAGNCGLQVDVPVPRVDVLSVLFAEEPGLVLEVQEPD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 LAQVLKRYRDAGLHCLELGHTGEAGPHAMVRVSVNGAVVLEEPVGELRALWEETSFQLDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LAQVLKRYRDAGLHCLELGHTGEAGPHAMVRVSVNGAVVLEEPVGELRALWEETSFQLDR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 LQAEPRCVAEEERGLRERMGPSYCLPPTFPKASVPREPGGPSPRVAILREEGSNGDREMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQAEPRCVAEEERGLRERMGPSYCLPPTFPKASVPREPGGPSPRVAILREEGSNGDREMA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 DAFHLAGFEVWDVTMQDLCSGAIGLDTFRGVAFVGGFSYADVLGSAKGWAAAVTFHPRAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DAFHLAGFEVWDVTMQDLCSGAIGLDTFRGVAFVGGFSYADVLGSAKGWAAAVTFHPRAG
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 AELRRFRKRPDTFSLGVCNGCQLLALLGWVGGDPNEDAAEMGPDSQPARPGLLLRHNLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AELRRFRKRPDTFSLGVCNGCQLLALLGWVGGDPNEDAAEMGPDSQPARPGLLLRHNLSG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 RYESRWASVRVGPGPALMLRGMEGAVLPVWSAHGEGYVAFSSPELQAQIEARGLAPLHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RYESRWASVRVGPGPALMLRGMEGAVLPVWSAHGEGYVAFSSPELQAQIEARGLAPLHWA
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 DDDGNPTEQYPLNPNGSPGGVAGICSCDGRHLAVMPHPERAVRPWQWAWRPPPFDTLTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDDGNPTEQYPLNPNGSPGGVAGICSCDGRHLAVMPHPERAVRPWQWAWRPPPFDTLTTS
1270 1280 1290 1300 1310 1320
1330
pF1KA0 PWLQLSINARNWTLEGSC
::::: ::::::::::::
CCDS11 PWLQLFINARNWTLEGSC
1330
1338 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:25:24 2016 done: Thu Nov 3 09:25:25 2016
Total Scan time: 5.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]