FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0318, 1052 aa
  1>>>pF1KA0318 1052 - 1052 aa - 1052 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6667+/-0.000991; mu= 2.1645+/- 0.060
 mean_var=225.8043+/-45.703, 0's: 0 Z-trim(111.9): 23  B-trim: 9 in 1/52
 Lambda= 0.085351
 statistics sampled from 12741 (12761) to 12741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.392), width:  16
 Scan time:  5.630

The best scores are:                                      opt bits E(32554)
CCDS31925.1 RIMBP2 gene_id:23504|Hs108|chr12       (1052) 7038 880.3       0


>>CCDS31925.1 RIMBP2 gene_id:23504|Hs108|chr12            (1052 aa)
 initn: 7344 init1: 7038 opt: 7038  Z-score: 4694.7  bits: 880.3 E(32554):    0
Smith-Waterman score: 7038; 99.9% identity (99.9% similar) in 1052 aa overlap (1-1052:1-1052)

               10        20        30        40        50        60
pF1KA0 MREAAERRQQLQLEHDQALAVLSAKQQEIDLLQKSKVRELEEKCRTQSEQFNLLSRDLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MREAAERRQQLQLEHDQALAVLSAKQQEIDLLQKSKVRELEEKCRTQSEQFNLLSRDLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 FRQHAGKIDLLGGSAVAPLDISTAPSKPFPQFMNGLATSLGKGQESAIGGSSAIGEYIRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FRQHAGKIDLLGGSAVAPLDISTAPSKPFPQFMNGLATSLGKGQESAIGGSSAIGEYIRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LPQPGDRPEPLSAKPTFLSRSGSARCRSESDMENERNSNTSKQRYSGKVHLCVARYSYNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPQPGDRPEPLSAKPTFLSRSGSARCRSESDMENERNSNTSKQRYSGKVHLCVARYSYNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 FDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 STLGNEQDQNFINHSGIGLEGEHILDLHSPTHIDAGITDNSAGTLDVNIDDIGEDIVPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 STLGNEQDQNFINHSGIGLEGEHILDLHSPTHIDAGITDNSAGTLDVNIDDIGEDIVPYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 RKITLIKQLAKSVIVGWEPPAVPPGWGTVSSYNVLVDKETRMNLTLGSRTKALIEKLNMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RKITLIKQLAKSVIVGWEPPAVPPGWGTVSSYNVLVDKETRMNLTLGSRTKALIEKLNMA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 ACTYRISVQCVTSRGSSDELQCTLLVGKDVVVAPSHLRVDNITQISAQLSWLPTNSNYSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ACTYRISVQCVTSRGSSDELQCTLLVGKDVVVAPSHLRVDNITQISAQLSWLPTNSNYSH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 VIFLNEEEFDIVKAARYKYQFFNLRPNMAYKVKVLAKPHQMPWQLPLEQREKKEAFVEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VIFLNEEEFDIVKAARYKYQFFNLRPNMAYKVKVLAKPHQMPWQLPLEQREKKEAFVEFS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 TLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 FPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPRPAPQSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPRPAPQSK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 PLASSGVPETKDEHLGPHARMDEAWEQSRAPGPVHGHMLEPPVGPGRRSPSPSRILPQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLASSGVPETKDEHLGPHARMDEAWEQSRAPGPVHGHMLEPPVGPGRRSPSPSRILPQPQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 GTPVSTTVAKAMAREAAQRVAESSRLEKRSVFLERSSAGQYAASDEEDAYDSPDFKRRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GTPVSTTVAKAMAREAAQRVAESSRLEKRSVFLERSSAGQYAASDEEDAYDSPDFKRRGA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 SVDDFLKGSELGKQPHCCHGDEYHTESSRGSDLSDIMEEDEEELYSEMQLEDGGRRRPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SVDDFLKGSELGKQPHCCHGDEYHTESSRGSDLSDIMEEDEEELYSEMQLEDGGRRRPSG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 TSHNALKILGNPASAGRVDHMGRRFPRGSAGPQRSRPVTVPSIDDYGRDRLSPDFYEESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSHNALKILGNPASAGRVDHMGRRFPRGSAGPQRSRPVTVPSIDDYGRDRLSPDFYEESE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 ARLGLIPCNMVSEIQADDEEMMDQLLRQGFLPLNTPVEKIERSRRSGRRHSVSTRRMVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARLGLIPCNMVSEIQADDEEMMDQLLRQGFLPLNTPVEKIERSRRSGRRHSVSTRRMVAL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 YDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVPDD
              970       980       990      1000      1010      1020

             1030      1040      1050  
pF1KA0 VEVYLSDAPSHYSQDTPMRSKAKRKKSVHFIP
       :::::::::::::::::::::::::::::: :
CCDS31 VEVYLSDAPSHYSQDTPMRSKAKRKKSVHFTP
             1030      1040      1050  




1052 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:38:07 2016 done: Fri Nov  4 00:38:08 2016
 Total Scan time:  5.630 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]