Result of FASTA (ccds) for
pF1KA0311
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0311, 2319 aa
1>>>pF1KA0311 2319 - 2319 aa - 2319 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7107+/-0.00115; mu= 14.0705+/- 0.069
mean_var=130.5226+/-25.691, 0's: 0 Z-trim(104.8): 33 B-trim: 3 in 1/51
Lambda= 0.112262
statistics sampled from 8078 (8098) to 8078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.249), width: 16
Scan time: 5.700
The best scores are: opt bits E(32554)
CCDS9644.1 AKAP6 gene_id:9472|Hs108|chr14 (2319) 15178 2471.5 0
>>CCDS9644.1 AKAP6 gene_id:9472|Hs108|chr14 (2319 aa)
initn: 15178 init1: 15178 opt: 15178 Z-score: 13281.5 bits: 2471.5 E(32554): 0
Smith-Waterman score: 15178; 100.0% identity (100.0% similar) in 2319 aa overlap (1-2319:1-2319)
10 20 30 40 50 60
pF1KA0 MLTMSVTLSPLRSQDLDPMATDASPMAINMTPTVEQGEGEEAMKDMDSDQQYEKPPPLHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MLTMSVTLSPLRSQDLDPMATDASPMAINMTPTVEQGEGEEAMKDMDSDQQYEKPPPLHT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 DILQAFSEETKEGRLDSLTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DILQAFSEETKEGRLDSLTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 GDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLTVAADSISTNGSEAVTEEVSQVSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLTVAADSISTNGSEAVTEEVSQVSLS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 VDDKGGCEEDNASAVEEQPGLTLGVSSSSGEALTNAAQPSSETVQQESSSSSHHDAKNQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VDDKGGCEEDNASAVEEQPGLTLGVSSSSGEALTNAAQPSSETVQQESSSSSHHDAKNQQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 PVPCENATPKRTIRDCFNYNEDSPTQPTLPKRGLFLKEETFKNDLKGNGGKRQMVDLKPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 PVPCENATPKRTIRDCFNYNEDSPTQPTLPKRGLFLKEETFKNDLKGNGGKRQMVDLKPE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 MSRSTPSLVDPPDRSKLCLVLQSSYPNSPSAASQSYECLHKVGNGNLENTVKFHIKEISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MSRSTPSLVDPPDRSKLCLVLQSSYPNSPSAASQSYECLHKVGNGNLENTVKFHIKEISS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 SLGRLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKSSAVPNGELSYTSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SLGRLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKSSAVPNGELSYTSKA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 IEGPQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDNIMSPVPLLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IEGPQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDNIMSPVPLLSK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 HKSKKGQASSPSHVTRNGEVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 HKSKKGQASSPSHVTRNGEVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ETIQNIDDWELSEMNSDSEIYPTYHVKKKHTRLGRVSPSSSSDIASSLGESIESGPLSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ETIQNIDDWELSEMNSDSEIYPTYHVKKKHTRLGRVSPSSSSDIASSLGESIESGPLSDI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LSDEESSMPLAGMKKYADEKSERASSSEKNESHSATKSALIQKLMQDIQHQDNYEAIWEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LSDEESSMPLAGMKKYADEKSERASSSEKNESHSATKSALIQKLMQDIQHQDNYEAIWEK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 IEGFVNKLDEFIQWLNEAMETTENWTPPKAEMDDLKLYLETHLSFKLNVDSHCALKEAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IEGFVNKLDEFIQWLNEAMETTENWTPPKAEMDDLKLYLETHLSFKLNVDSHCALKEAVE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 EEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EDEEGTGSPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSVGSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EDEEGTGSPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSVGSNG
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 LLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRHLKKTELLSKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRHLKKTELLSKV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 EALKKGGVLLPNDLLEKVDSINEKWELLGKTLGEKIQDTMAGHSGSSPRDLLSPESGSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EALKKGGVLLPNDLLEKVDSINEKWELLGKTLGEKIQDTMAGHSGSSPRDLLSPESGSLV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 RQLEVRIKELKGWLRDTELFIFNSCLRQEKEGTMNTEKQLQYFKSLCREIKQRRRGVASI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RQLEVRIKELKGWLRDTELFIFNSCLRQEKEGTMNTEKQLQYFKSLCREIKQRRRGVASI
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 LRLCQHLLDDRETCNLNADHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESETLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LRLCQHLLDDRETCNLNADHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESETLN
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 VIDPGLMDLNGMSEDALEWDEMDISNKLISLNEESNDLDQELQPVIPSLKLGETSNEDPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VIDPGLMDLNGMSEDALEWDEMDISNKLISLNEESNDLDQELQPVIPSLKLGETSNEDPG
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 YDEEADNHGGSQYASNITAPSSPHIYQVYSLHNVELYEDNHMPFLKNNPKVTGMTQPNVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YDEEADNHGGSQYASNITAPSSPHIYQVYSLHNVELYEDNHMPFLKNNPKVTGMTQPNVL
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 TKSLSKDSSFSSTKSLPDLLGGSNLVKPCACHGGDMSQNSGSESGIVSEGDTETTTNSEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TKSLSKDSSFSSTKSLPDLLGGSNLVKPCACHGGDMSQNSGSESGIVSEGDTETTTNSEM
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 CLLNAVDGSPSNLETEHLDPQMGDAVNVLKQKFTDEGESIKLPNSSQSSISPVGCVNGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 CLLNAVDGSPSNLETEHLDPQMGDAVNVLKQKFTDEGESIKLPNSSQSSISPVGCVNGKV
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 GDLNSITKHTPDCLGEELQGKHDVFTFYDYSYLQGSKLKLPMIMKQSQSEKAHVEDPLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GDLNSITKHTPDCLGEELQGKHDVFTFYDYSYLQGSKLKLPMIMKQSQSEKAHVEDPLLR
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 GFYFDKKSCKSKHQTTELQPDVPPHERILASASHEMDRISYKSGNIEKTFTGMQNAKQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GFYFDKKSCKSKHQTTELQPDVPPHERILASASHEMDRISYKSGNIEKTFTGMQNAKQLS
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 LLSHSSSIESLSPGGDLFGLGIFKNGSDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LLSHSSSIESLSPGGDLFGLGIFKNGSDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISV
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 SSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSSSQKMSFTGQMSLDIASSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSSSQKMSFTGQMSLDIASSI
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 NEDSAASLTELSSSDELSLCSEDIVLHKNKIPESNASFRKRLTRSVADESDVNVSMIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NEDSAASLTELSSSDELSLCSEDIVLHKNKIPESNASFRKRLTRSVADESDVNVSMIVNV
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 SCTSACTDDEDDSDLLSSSTLTLTEEELCIKDEDDDSSIATDDEIYEDCTLMSGLDYIKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SCTSACTDDEDDSDLLSSSTLTLTEEELCIKDEDDDSSIATDDEIYEDCTLMSGLDYIKN
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 ELQTWIRPKLSLTRDKKRCNVSDEMKGSKDISSSEMTNPSDTLNIETLLNGSVKRVSENN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ELQTWIRPKLSLTRDKKRCNVSDEMKGSKDISSSEMTNPSDTLNIETLLNGSVKRVSENN
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 GNGKNSSHTHELGTKRENKKTIFKVNKDPYVADMENGNIEGIPERQKGKPNVTSKVSENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GNGKNSSHTHELGTKRENKKTIFKVNKDPYVADMENGNIEGIPERQKGKPNVTSKVSENL
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KA0 GSHGKEISESEHCKCKALMDSLDDSNTAGKEFVSQDVRHLPKKCPNHHHFENQSTASTPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GSHGKEISESEHCKCKALMDSLDDSNTAGKEFVSQDVRHLPKKCPNHHHFENQSTASTPT
1930 1940 1950 1960 1970 1980
1990 2000 2010 2020 2030 2040
pF1KA0 EKSFSELALETRFNNRQDSDALKSSDDAPSMAGKSAGCCLALEQNGTEENASISNISCCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EKSFSELALETRFNNRQDSDALKSSDDAPSMAGKSAGCCLALEQNGTEENASISNISCCN
1990 2000 2010 2020 2030 2040
2050 2060 2070 2080 2090 2100
pF1KA0 CEPDVFHQKDAEDCSVHNFVKEIIDMASTALKSKSQPENEVAAPTSLTQIKEKVLEHSHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 CEPDVFHQKDAEDCSVHNFVKEIIDMASTALKSKSQPENEVAAPTSLTQIKEKVLEHSHR
2050 2060 2070 2080 2090 2100
2110 2120 2130 2140 2150 2160
pF1KA0 PIQLRKGDFYSYLSLSSHDSDCGEVTNYIEEKSSTPLPLDTTDSGLDDKEDIECFFEACV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 PIQLRKGDFYSYLSLSSHDSDCGEVTNYIEEKSSTPLPLDTTDSGLDDKEDIECFFEACV
2110 2120 2130 2140 2150 2160
2170 2180 2190 2200 2210 2220
pF1KA0 EGDSDGEEPCFSSAPPNESAVPSEAAMPLQATACSSEFSDSSLSADDADTVALSSPSSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EGDSDGEEPCFSSAPPNESAVPSEAAMPLQATACSSEFSDSSLSADDADTVALSSPSSQE
2170 2180 2190 2200 2210 2220
2230 2240 2250 2260 2270 2280
pF1KA0 RAEVGKEVNGLPQTSSGCAENLEFTPSKLDSEKESSGKPGESGMPEEHNAASAKSKVQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RAEVGKEVNGLPQTSSGCAENLEFTPSKLDSEKESSGKPGESGMPEEHNAASAKSKVQDL
2230 2240 2250 2260 2270 2280
2290 2300 2310
pF1KA0 SLKANQPTDKAALHPSPKTLTCEENLLNLHEKRHRNMHR
:::::::::::::::::::::::::::::::::::::::
CCDS96 SLKANQPTDKAALHPSPKTLTCEENLLNLHEKRHRNMHR
2290 2300 2310
2319 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:32:51 2016 done: Wed Nov 2 18:32:52 2016
Total Scan time: 5.700 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]