Result of FASTA (ccds) for
pF1KA0261
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0261, 1275 aa
1>>>pF1KA0261 1275 - 1275 aa - 1275 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2584+/-0.000972; mu= 14.3453+/- 0.059
mean_var=124.5759+/-24.047, 0's: 0 Z-trim(108.8): 20 B-trim: 42 in 1/51
Lambda= 0.114910
statistics sampled from 10473 (10475) to 10473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.322), width: 16
Scan time: 5.180
The best scores are: opt bits E(32554)
CCDS7375.1 WAPL gene_id:23063|Hs108|chr10 (1190) 7851 1313.6 0
>>CCDS7375.1 WAPL gene_id:23063|Hs108|chr10 (1190 aa)
initn: 7851 init1: 7851 opt: 7851 Z-score: 7034.0 bits: 1313.6 E(32554): 0
Smith-Waterman score: 7851; 100.0% identity (100.0% similar) in 1190 aa overlap (86-1275:1-1190)
60 70 80 90 100 110
pF1KA0 PAGRRERERRRRPVAKAPARLRGEYETGVKMTSRFGKTYSRKGGNGSSKFDEVFSNKRTT
::::::::::::::::::::::::::::::
CCDS73 MTSRFGKTYSRKGGNGSSKFDEVFSNKRTT
10 20 30
120 130 140 150 160 170
pF1KA0 LSTKWGETTFMAKLGQKRPNFKPDIQEIPKKPKVEEESTGDPFGFDSDDESLPVSSKNLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LSTKWGETTFMAKLGQKRPNFKPDIQEIPKKPKVEEESTGDPFGFDSDDESLPVSSKNLA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KA0 QVKCSSYSESSEAAQLEEVTSVLEANSKISHVVVEDTVVSDKCFPLEDTLLGKEKSTNRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QVKCSSYSESSEAAQLEEVTSVLEANSKISHVVVEDTVVSDKCFPLEDTLLGKEKSTNRI
100 110 120 130 140 150
240 250 260 270 280 290
pF1KA0 VEDDASISSCNKLITSDKVENFHEEHEKNSHHIHKNADDSTKKPNAETTVASEIKETNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VEDDASISSCNKLITSDKVENFHEEHEKNSHHIHKNADDSTKKPNAETTVASEIKETNDT
160 170 180 190 200 210
300 310 320 330 340 350
pF1KA0 WNSQFGKRPESPSEISPIKGSVRTGLFEWDNDFEDIRSEDCILSLDSDPLLEMKDDDFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WNSQFGKRPESPSEISPIKGSVRTGLFEWDNDFEDIRSEDCILSLDSDPLLEMKDDDFKN
220 230 240 250 260 270
360 370 380 390 400 410
pF1KA0 RLENLNEAIEEDIVQSVLRPTNCRTYCRANKTKSSQGASNFDKLMDGTSQALAKANSESS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RLENLNEAIEEDIVQSVLRPTNCRTYCRANKTKSSQGASNFDKLMDGTSQALAKANSESS
280 290 300 310 320 330
420 430 440 450 460 470
pF1KA0 KDGLNQAKKGGVSCGTSFRGTVGRTRDYTVLHPSCLSVCNVTIQDTMERSMDEFTASTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KDGLNQAKKGGVSCGTSFRGTVGRTRDYTVLHPSCLSVCNVTIQDTMERSMDEFTASTPA
340 350 360 370 380 390
480 490 500 510 520 530
pF1KA0 DLGEAGRLRKKADIATSKTTTRFRPSNTKSKKDVKLEFFGFEDHETGGDEGGSGSSNYKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DLGEAGRLRKKADIATSKTTTRFRPSNTKSKKDVKLEFFGFEDHETGGDEGGSGSSNYKI
400 410 420 430 440 450
540 550 560 570 580 590
pF1KA0 KYFGFDDLSESEDDEDDDCQVERKTSKKRTKTAPSPSLQPPPESNDNSQDSQSGTNNAEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KYFGFDDLSESEDDEDDDCQVERKTSKKRTKTAPSPSLQPPPESNDNSQDSQSGTNNAEN
460 470 480 490 500 510
600 610 620 630 640 650
pF1KA0 LDFTEDLPGVPESVKKPINKQGDKSKENTRKIFSGPKRSPTKAVYNARHWNHPDSEELPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LDFTEDLPGVPESVKKPINKQGDKSKENTRKIFSGPKRSPTKAVYNARHWNHPDSEELPG
520 530 540 550 560 570
660 670 680 690 700 710
pF1KA0 PPVVKPQSVTVRLSSKEPNQKDDGVFKAPAPPSKVIKTVTIPTQPYQDIVTALKCRREDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PPVVKPQSVTVRLSSKEPNQKDDGVFKAPAPPSKVIKTVTIPTQPYQDIVTALKCRREDK
580 590 600 610 620 630
720 730 740 750 760 770
pF1KA0 ELYTVVQHVKHFNDVVEFGENQEFTDDIEYLLSGLKSTQPLNTRCLSVISLATKCAMPSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ELYTVVQHVKHFNDVVEFGENQEFTDDIEYLLSGLKSTQPLNTRCLSVISLATKCAMPSF
640 650 660 670 680 690
780 790 800 810 820 830
pF1KA0 RMHLRAHGMVAMVFKTLDDSQHHQNLSLCTAALMYILSRDRLNMDLDRASLDLMIRLLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RMHLRAHGMVAMVFKTLDDSQHHQNLSLCTAALMYILSRDRLNMDLDRASLDLMIRLLEL
700 710 720 730 740 750
840 850 860 870 880 890
pF1KA0 EQDASSAKLLNEKDMNKIKEKIRRLCETVHNKHLDLENITTGHLAMETLLSLTSKRAGDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EQDASSAKLLNEKDMNKIKEKIRRLCETVHNKHLDLENITTGHLAMETLLSLTSKRAGDW
760 770 780 790 800 810
900 910 920 930 940 950
pF1KA0 FKEELRLLGGLDHIVDKVKECVDHLSRDEDEEKLVASLWGAERCLRVLESVTVHNPENQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FKEELRLLGGLDHIVDKVKECVDHLSRDEDEEKLVASLWGAERCLRVLESVTVHNPENQS
820 830 840 850 860 870
960 970 980 990 1000 1010
pF1KA0 YLIAYKDSQLIVSSAKALQHCEELIQQYNRAEDSICLADSKPLPHQNVTNHVGKAVEDCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YLIAYKDSQLIVSSAKALQHCEELIQQYNRAEDSICLADSKPLPHQNVTNHVGKAVEDCM
880 890 900 910 920 930
1020 1030 1040 1050 1060 1070
pF1KA0 RAIIGVLLNLTNDNEWGSTKTGEQDGLIGTALNCVLQVPKYLPQEQRFDIRVLGLGLLIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RAIIGVLLNLTNDNEWGSTKTGEQDGLIGTALNCVLQVPKYLPQEQRFDIRVLGLGLLIN
940 950 960 970 980 990
1080 1090 1100 1110 1120 1130
pF1KA0 LVEYSARNRHCLVNMETSCSFDSSICSGEGDDSLRIGGQVHAVQALVQLFLERERAAQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LVEYSARNRHCLVNMETSCSFDSSICSGEGDDSLRIGGQVHAVQALVQLFLERERAAQLA
1000 1010 1020 1030 1040 1050
1140 1150 1160 1170 1180 1190
pF1KA0 ESKTDELIKDAPTTQHDKSGEWQETSGEIQWVSTEKTDGTEEKHKKEEEDEELDLNKALQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ESKTDELIKDAPTTQHDKSGEWQETSGEIQWVSTEKTDGTEEKHKKEEEDEELDLNKALQ
1060 1070 1080 1090 1100 1110
1200 1210 1220 1230 1240 1250
pF1KA0 HAGKHMEDCIVASYTALLLGCLCQESPINVTTVREYLPEGDFSIMTEMLKKFLSFMNLTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HAGKHMEDCIVASYTALLLGCLCQESPINVTTVREYLPEGDFSIMTEMLKKFLSFMNLTC
1120 1130 1140 1150 1160 1170
1260 1270
pF1KA0 AVGTTGQKSISRVIEYLEHC
::::::::::::::::::::
CCDS73 AVGTTGQKSISRVIEYLEHC
1180 1190
1275 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:36:45 2016 done: Fri Nov 4 00:36:46 2016
Total Scan time: 5.180 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]