Result of FASTA (ccds) for
pF1KA0240
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0240, 1079 aa
1>>>pF1KA0240 1079 - 1079 aa - 1079 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6944+/-0.00121; mu= 0.8479+/- 0.072
mean_var=194.8222+/-41.403, 0's: 0 Z-trim(107.9): 44 B-trim: 175 in 2/50
Lambda= 0.091887
statistics sampled from 9811 (9842) to 9811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.302), width: 16
Scan time: 4.170
The best scores are: opt bits E(32554)
CCDS34451.1 GLTSCR1L gene_id:23506|Hs108|chr6 (1079) 7071 951.0 0
CCDS46134.1 GLTSCR1 gene_id:29998|Hs108|chr19 (1560) 597 92.8 6.3e-18
>>CCDS34451.1 GLTSCR1L gene_id:23506|Hs108|chr6 (1079 aa)
initn: 7071 init1: 7071 opt: 7071 Z-score: 5076.2 bits: 951.0 E(32554): 0
Smith-Waterman score: 7071; 100.0% identity (100.0% similar) in 1079 aa overlap (1-1079:1-1079)
10 20 30 40 50 60
pF1KA0 MDDDDDSCLLDLIGDPQALNYFLHGPSNKSSNDDLTNAGYSAANSNSIFANSSNADPKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDDDDDSCLLDLIGDPQALNYFLHGPSNKSSNDDLTNAGYSAANSNSIFANSSNADPKSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LKGVSNQLGEGPSDGLPLSSSLQFLEDELESSPLPDLTEDQPFDILQKSLQEANITEQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKGVSNQLGEGPSDGLPLSSSLQFLEDELESSPLPDLTEDQPFDILQKSLQEANITEQTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 AEEAYLDASIGSSQQFAQAQLHPSSSASFTQASNVSNYSGQTLQPIGVTHVPVGASFASN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AEEAYLDASIGSSQQFAQAQLHPSSSASFTQASNVSNYSGQTLQPIGVTHVPVGASFASN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 TVGVQHGFMQHVGISVPSQHLSNSSQISGSGQIQLIGSFGNHPSMMTINNLDGSQIILKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TVGVQHGFMQHVGISVPSQHLSNSSQISGSGQIQLIGSFGNHPSMMTINNLDGSQIILKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SGQQAPSNVSGGLLVHRQTPNGNSLFGNSSSSPVAQPVTVPFNSTNFQTSLPVHNIIIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGQQAPSNVSGGLLVHRQTPNGNSLFGNSSSSPVAQPVTVPFNSTNFQTSLPVHNIIIQR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GLAPNSNKVPINIQPKPIQMGQQNTYNVNNLGIQQHHVQQGISFASASSPQGSVVGPHMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GLAPNSNKVPINIQPKPIQMGQQNTYNVNNLGIQQHHVQQGISFASASSPQGSVVGPHMS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 VNIVNQQNTRKPVTSQAVSSTGGSIVIHSPMGQPHAPQSQFLIPTSLSVSSNSVHHVQTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VNIVNQQNTRKPVTSQAVSSTGGSIVIHSPMGQPHAPQSQFLIPTSLSVSSNSVHHVQTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 NGQLLQTQPSQLISGQVASEHVMLNRNSSNMLRTNQPYTGPMLNNQNTAVHLVSGQTFAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NGQLLQTQPSQLISGQVASEHVMLNRNSSNMLRTNQPYTGPMLNNQNTAVHLVSGQTFAA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 SGSPVIANHASPQLVGGQMPLQQASPTVLHLSPGQSSVSQGRPGFATMPSVTSMSGPSRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGSPVIANHASPQLVGGQMPLQQASPTVLHLSPGQSSVSQGRPGFATMPSVTSMSGPSRF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 PAVSSASTAHPSLGSAVQSGSSGSNFTGDQLTQPNRTPVPVSVSHRLPVSSSKSTSTFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PAVSSASTAHPSLGSAVQSGSSGSNFTGDQLTQPNRTPVPVSVSHRLPVSSSKSTSTFSN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 TPGTGTQQQFFCQAQKKCLNQTSPISAPKTTDGLRQAQIPGLLSTTLPGQDSGSKVISAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TPGTGTQQQFFCQAQKKCLNQTSPISAPKTTDGLRQAQIPGLLSTTLPGQDSGSKVISAS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LGTAQPQQEKVVGSSPGHPAVQVESHSGGQKRPAAKQLTKGAFILQQLQRDQAHTVTPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LGTAQPQQEKVVGSSPGHPAVQVESHSGGQKRPAAKQLTKGAFILQQLQRDQAHTVTPDK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SHFRSLSDAVQRLLSYHVCQGSMPTEEDLRKVDNEFETVATQLLKRTQAMLNKYRCLLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SHFRSLSDAVQRLLSYHVCQGSMPTEEDLRKVDNEFETVATQLLKRTQAMLNKYRCLLLE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 DAMRINPSAEMVMIDRMFNQEERASLSRDKRLALVDPEGFQADFCCSFKLDKAAHETQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DAMRINPSAEMVMIDRMFNQEERASLSRDKRLALVDPEGFQADFCCSFKLDKAAHETQFG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 RSDQHGSKASSSLQPPAKAQGRDRAKTGVTEPMNHDQFHLVPNHIVVSAEGNISKKTECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSDQHGSKASSSLQPPAKAQGRDRAKTGVTEPMNHDQFHLVPNHIVVSAEGNISKKTECL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 GRALKFDKVGLVQYQSTSEEKASRREPLKASQCSPGPEGHRKTSSRSDHGTESKLSSILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GRALKFDKVGLVQYQSTSEEKASRREPLKASQCSPGPEGHRKTSSRSDHGTESKLSSILA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 DSHLEMTCNNSFQDKSLRNSPKNEVLHTDIMKGSGEPQPDLQLTKSLETTFKNILELKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DSHLEMTCNNSFQDKSLRNSPKNEVLHTDIMKGSGEPQPDLQLTKSLETTFKNILELKKA
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070
pF1KA0 GRQPQSDPTVSGSVELDFPNFSPMASQENCLEKFIPDHSEGVVETDSILEAAVNSILEC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GRQPQSDPTVSGSVELDFPNFSPMASQENCLEKFIPDHSEGVVETDSILEAAVNSILEC
1030 1040 1050 1060 1070
>>CCDS46134.1 GLTSCR1 gene_id:29998|Hs108|chr19 (1560 aa)
initn: 750 init1: 412 opt: 597 Z-score: 435.4 bits: 92.8 E(32554): 6.3e-18
Smith-Waterman score: 644; 25.1% identity (52.4% similar) in 1072 aa overlap (10-1025:378-1381)
10 20 30
pF1KA0 MDDDDDSCLLDLIGDPQALNYFLHGPSNKS------SND
: . :.: :: ..:.: . ...
CCDS46 PTPIQPKPAGVLPPKLYQLTPKPFAPAGATLTIQGEPGALPQQPKAPQNLTFMAAGKAGQ
350 360 370 380 390 400
40 50 60 70 80
pF1KA0 DLTNAGYSA-ANSNSIF----ANSSNADPKSSLKGVSNQ-----LGEGPSDGLPLSSSL-
... .:. : : . ..: :....: : . ..:. :..: : .: . :
CCDS46 NVVLSGFPAPALQANVFKQPPATTTGAAPPQPPGALSKPMSVHLLNQGSSIVIPAQHMLP
410 420 430 440 450 460
90 100 110 120 130
pF1KA0 ---QFLEDELESSPLPDLTEDQPFDILQKSLQEA--NITEQTLAEEAYLDASIGSSQQFA
::: . ::. : .. . : : . : .:. . .... ...
CCDS46 GQNQFLLPGAPAVQLPQQLSALPANVGGQILAAAAPHTGGQLIANPILTNQNLAGPLSLG
470 480 490 500 510 520
140 150 160 170 180 190
pF1KA0 QAQLHPSSSASFTQASNVSNYSGQTLQPIGVTHVPVGASFASNTVGVQHGFMQHVGISVP
. : : :.: .: .: :. :: .. ..:: :.:.... .: : . .
CCDS46 PV-LAPHSGAH--SAHILSAAPIQVGQP-ALFQMPV--SLAAGSLPTQS---QPAPAGPA
530 540 550 560 570
200 210 220 230 240 250
pF1KA0 SQHLSNSSQISGSGQIQLIGSFG-NHPSMMTINNLDGSQIILKGSGQQAPSNVSGGLLVH
. . .. . :. .: : .:. . . ... .. . ::: :: : .
CCDS46 ATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQAPPAVSTPLPLG
580 590 600 610 620 630
260 270 280 290 300 310
pF1KA0 RQTPNGNSLFGNSSSSPVAQP-VTVPFNSTNFQTSLPVHNIIIQRGLAPNSNKVPINIQP
: :.... . . .: : .:.: : .. .: : ..:.. : :... . : :
CCDS46 LQQPQAQQPPQAPTPQAAAPPQATTPQPSPGLASS-P-EKIVL--GQPPSATPTAILTQD
640 650 660 670 680 690
320 330 340 350 360 370
pF1KA0 KPIQMGQQNTYNVNNLGIQQHHVQQGISFASASSPQGSVVGPHMSVNIVNQQNTRKPVTS
. .:: . . . :. . :.. : .. : .. .: : . . : :
CCDS46 S-LQMFLPQERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAP-DS
700 710 720 730 740 750
380 390 400 410 420 430
pF1KA0 QAVSSTGGSIVIHSPMGQPHAPQSQFLIPTSLSVSSNSVHHVQTINGQLLQTQPSQLISG
:: . . .: .:. : .:.:. .: . .. .: : : . .:.. :
CCDS46 QASPAPAPQIPAAAPLKGP-GPSSSPSLPHQAPLG-DSPH--------LPSPHPTRPPS-
760 770 780 790 800
440 450 460 470 480 490
pF1KA0 QVASEHVMLNRNSSN--MLRTNQPYTGPMLNNQNTAVHLVSGQTFAASGSPVIANHASPQ
. :. ..: :. . : . : : . . . .. :.. .:. . .:
CCDS46 RPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPP
810 820 830 840 850 860
500 510 520 530 540
pF1KA0 LVGGQMPLQQASPTVLHLSPGQSS--VSQGRPGFATMPSVTSMSGPSRFPAVSS---AST
: ..: . : . :: :...: :... . .:. : . .:: .. . :
CCDS46 LRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPT
870 880 890 900 910 920
550 560 570 580 590
pF1KA0 AHPSLGSAVQSGSSGSN--FTGDQLTQP-NRTPVPVSVS---HRLP-----------VSS
:.: . . .. : ...: : : : .. :..: . .
CCDS46 PPPTLHLVPEPAAPPPPPPRTFQMVTTPFPALPQPKALLERFHQVPSGIILQNKAGGAPA
930 940 950 960 970 980
600 610 620 630 640 650
pF1KA0 SKSTSTFSNTPGTGTQQQFFCQAQKKCLNQTSPISAPKTTDGLRQAQIPGLLSTTLPGQD
. .::: : : :. . . ..: . :.: :: . . . .: :: :...
CCDS46 APQTST-SLGPLTSPAASVLVSGQAPSGTPTAPSHAPAPAP-MAATGLPPLL----PAEN
990 1000 1010 1020 1030
660 670 680 690 700 710
pF1KA0 SGSKVISASLGTAQPQQEKVVGSSPGHPA-VQVESHSGGQKRPAAKQLTKGAFILQQLQR
:.....: : . :...:.::.:. .: ::. .: :.: . : .: : .:..:..
CCDS46 ---KAFASNLPTLNV--AKAASSGPGKPSGLQYESKLSGLKKPPTLQPSKEACFLEHLHK
1040 1050 1060 1070 1080 1090
720 730 740 750 760
pF1KA0 DQAHTVTPD-KSHFRSLSDAVQRLLSYHVCQGSMPTEEDLRKVDNEFETVATQLLKRTQA
:. .. :: :. : :. ::..::: ::: ::..:. : .:::.:::::.:::::::::
CCDS46 HQGSVLHPDYKTAFPSFEDALHRLLPYHVYQGALPSPSDYHKVDEEFETVSTQLLKRTQA
1100 1110 1120 1130 1140 1150
770 780 790 800 810 820
pF1KA0 MLNKYRCLLLEDAMRINPSAEMVMIDRMFNQEERASLSRDKRLALVDPEGFQADFCCSFK
:::::: ::::.. :..:::::::::::: :::...:. ::.:: :. . .. :.
CCDS46 MLNKYRLLLLEESRRVSPSAEMVMIDRMFIQEEKTTLALDKQLAKEKPDEYVSS-SRSLG
1160 1170 1180 1190 1200
830 840 850 860 870 880
pF1KA0 LDKAAHETQFGRSDQHGSKASSSLQPPAKAQGRDRAKTGVTEPMNHDQFHLVPNHIVVSA
: :: .. : :: .::. : :..: : : .:...:.
CCDS46 LPIAAS-SEGHRLPGHGPLSSSA--PGASTQ-----------PPPH-----LPTKLVIRH
1210 1220 1230 1240 1250
890 900 910 920 930 940
pF1KA0 EGNISKKTECLGRALKFDKVGLVQYQSTSEEKASRREPLKASQCSPGPEGHR---KT-SS
: .. . .:: . :.: ..: : :.. .: : .: :: .
CCDS46 GGAGGSPSVTWARA--------SSSLSSSSSSSSAASSLDADEDGPMPSRNRPPIKTYEA
1260 1270 1280 1290 1300
950 960 970 980 990 1000
pF1KA0 RSDHGTESKLSSILADSHLEMTCNNSFQDKSLRNSPKNEVLHT--DIMKGSGEPQPDLQL
:: : . :... .. : . .:. : . : .:.. . : : :.
CCDS46 RSRIGLKLKIKQ---EAGLSKVVHNTALDPVHQPPPPPATLKVAEPPPRPPPPPPPTGQM
1310 1320 1330 1340 1350
1010 1020 1030 1040 1050 1060
pF1KA0 TKSLETTFKNILELKKAGRQPQSDPTVSGSVELDFPNFSPMASQENCLEKFIPDHSEGVV
. ... : : : :.
CCDS46 NGTVDHPPPAAPERKPLGTAPHCPRLPLRKTYRENVGGPGAPEGTPAGRARGGSPAPLPA
1360 1370 1380 1390 1400 1410
1079 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:34:52 2016 done: Thu Nov 3 19:34:53 2016
Total Scan time: 4.170 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]