FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0228, 585 aa
  1>>>pF1KA0228 585 - 585 aa - 585 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1946+/-0.00128; mu= 13.9790+/- 0.077
 mean_var=71.4952+/-14.346, 0's: 0 Z-trim(100.3): 41  B-trim: 37 in 1/50
 Lambda= 0.151683
 statistics sampled from 6032 (6050) to 6032 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.532), E-opt: 0.2 (0.186), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS32699.1 APPBP2 gene_id:10513|Hs108|chr17       ( 585) 3863 855.3       0


>>CCDS32699.1 APPBP2 gene_id:10513|Hs108|chr17            (585 aa)
 initn: 3863 init1: 3863 opt: 3863  Z-score: 4568.5  bits: 855.3 E(32554):    0
Smith-Waterman score: 3863; 100.0% identity (100.0% similar) in 585 aa overlap (1-585:1-585)

               10        20        30        40        50        60
pF1KA0 MAAVELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQQGRLCQLGSEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAVELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQQGRLCQLGSEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 CELEVFAKVLRALDKRHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CELEVFAKVLRALDKRHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 QVGFVLGGFLSDAGWYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QVGFVLGGFLSDAGWYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LGEETFKLAQTYMDKLSKHGQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LGEETFKLAQTYMDKLSKHGQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 PVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 VDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 IGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 FGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 YNYDMNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YNYDMNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVL
              490       500       510       520       530       540

              550       560       570       580     
pF1KA0 SNWNRLRDRQYSVTDALEDVSTSPQSTEEVVQSFLISQNVEGPSC
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SNWNRLRDRQYSVTDALEDVSTSPQSTEEVVQSFLISQNVEGPSC
              550       560       570       580     




585 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:58:20 2016 done: Sat Nov  5 21:58:21 2016
 Total Scan time:  2.740 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]