FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0227, 222 aa
  1>>>pF1KA0227 222 - 222 aa - 222 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8532+/-0.000268; mu= 9.8351+/- 0.017
 mean_var=151.0332+/-30.737, 0's: 0 Z-trim(123.8): 5  B-trim: 190 in 1/57
 Lambda= 0.104361
 statistics sampled from 44277 (44290) to 44277 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.519), width:  16
 Scan time:  5.550

The best scores are:                                      opt bits E(85289)
NP_056166 (OMIM: 610488) tetratricopeptide repeat  ( 222) 1484 233.7 1.8e-61


>>NP_056166 (OMIM: 610488) tetratricopeptide repeat prot  (222 aa)
 initn: 1484 init1: 1484 opt: 1484  Z-score: 1224.5  bits: 233.7 E(85289): 1.8e-61
Smith-Waterman score: 1484; 99.5% identity (99.5% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KA0 MERKGSAAGAKGNPSPPAAGEGQRPPPPLCVPGGGGGAPARGQVGAAAEPAELIRRAHEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MERKGSAAGAKGNPSPPAAGEGQRPPPPLCVPGGGGGAPARGQVGAAAEPAELIRRAHEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDSRAASPAGALKPGRLSEEQS
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
NP_056 KSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDSRPASPAGALKPGRLSEEQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 KTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLGDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLGDY
              130       140       150       160       170       180

              190       200       210       220  
pF1KA0 DKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCSQREKEAM
       ::::::::::::::::::::::::::::::::::::::::::
NP_056 DKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCSQREKEAM
              190       200       210       220  




222 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:33:25 2016 done: Fri Nov  4 00:33:26 2016
 Total Scan time:  5.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]