FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0227, 222 aa
  1>>>pF1KA0227 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9876+/-0.000662; mu= 9.3333+/- 0.040
 mean_var=148.9207+/-30.137, 0's: 0 Z-trim(116.4): 8  B-trim: 0 in 0/53
 Lambda= 0.105099
 statistics sampled from 17046 (17053) to 17046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.524), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS45132.1 TTC9 gene_id:23508|Hs108|chr14         ( 222) 1484 235.2 2.5e-62
CCDS12550.1 TTC9B gene_id:148014|Hs108|chr19       ( 239)  726 120.3   1e-27
CCDS8033.1 TTC9C gene_id:283237|Hs108|chr11        ( 171)  498 85.6 2.1e-17


>>CCDS45132.1 TTC9 gene_id:23508|Hs108|chr14              (222 aa)
 initn: 1484 init1: 1484 opt: 1484  Z-score: 1232.5  bits: 235.2 E(32554): 2.5e-62
Smith-Waterman score: 1484; 99.5% identity (99.5% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KA0 MERKGSAAGAKGNPSPPAAGEGQRPPPPLCVPGGGGGAPARGQVGAAAEPAELIRRAHEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MERKGSAAGAKGNPSPPAAGEGQRPPPPLCVPGGGGGAPARGQVGAAAEPAELIRRAHEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDSRAASPAGALKPGRLSEEQS
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS45 KSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDSRPASPAGALKPGRLSEEQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 KTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLGDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLGDY
              130       140       150       160       170       180

              190       200       210       220  
pF1KA0 DKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCSQREKEAM
       ::::::::::::::::::::::::::::::::::::::::::
CCDS45 DKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCSQREKEAM
              190       200       210       220  

>>CCDS12550.1 TTC9B gene_id:148014|Hs108|chr19            (239 aa)
 initn: 794 init1: 535 opt: 726  Z-score: 611.0  bits: 120.3 E(32554): 1e-27
Smith-Waterman score: 751; 55.2% identity (73.8% similar) in 221 aa overlap (14-218:16-226)

                 10        20        30        40                  
pF1KA0   MERKGSAAGAKGNPSPPAAGEGQRPPPPLCVPGGGGGAPAR-------------GQVG
                      : ::      :::: :  ::.: :. .:             :..:
CCDS12 MQRGALSPVLMLSAAPEPPP-----RPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLG
               10        20             30        40        50     

          50        60        70        80        90       100     
pF1KA0 AAAEPAELIRRAHEFKSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDSRAAS
       :: . .  .: :  ::..: .::..:::::::::::::::.::.     : :     : .
CCDS12 AALDSS--LRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKA---AQGARPSGLPAPA
          60          70        80        90          100       110

         110         120       130       140       150       160   
pF1KA0 PAGALKPG--RLSEEQSKTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGEN
       :. . .::  :::::: . ::. :..::.::.:::::.::::::::.:::::::.:.  :
CCDS12 PGPTSSPGPARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGN
              120       130       140       150       160       170

           170       180       190       200       210        220  
pF1KA0 FKALYRSGVAFYHLGDYDKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCS-QREKEAM
       ::: ::.:.:::::::: .:: ::.:::...::::::.::::::..:..::: :::    
CCDS12 FKATYRAGIAFYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMNRCSLQREDSGA
              180       190       200       210       220       230

CCDS12 GSQTRDVIG
                

>>CCDS8033.1 TTC9C gene_id:283237|Hs108|chr11             (171 aa)
 initn: 510 init1: 386 opt: 498  Z-score: 426.0  bits: 85.6 E(32554): 2.1e-17
Smith-Waterman score: 498; 47.9% identity (71.6% similar) in 169 aa overlap (54-220:5-164)

            30        40        50        60        70        80   
pF1KA0 RPPPPLCVPGGGGGAPARGQVGAAAEPAELIRRAHEFKSQGAQCYKDKKFREAIGKYHRA
                                     ...:. .: .: : :.. :.:.:...::::
CCDS80                           MEKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRA
                                         10        20        30    

            90       100       110         120       130       140 
pF1KA0 LLELKGLLPPPGERERDSRAASPAGALKPG--RLSEEQSKTVEAIEIDCYNSLAACLLQA
       ::.:.::         :    ::   : :    :. :: . ... . ::::.::::::: 
CCDS80 LLQLRGL---------DPSLPSPLPNLGPQGPALTPEQENILHTTQTDCYNNLAACLLQM
           40                 50        60        70        80     

             150       160       170       180       190       200 
pF1KA0 ELVNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLGDYDKALYYLKEARTQQPTDTNVI
       : ::::::.::  :::... .: :::::.::::.:: :::.: .::  : ..:: :.:: 
CCDS80 EPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVR
          90       100       110       120       130       140     

             210       220       
pF1KA0 RYIQLTEMKLSRCSQREKEAM     
       ::.:::. .::   ..::.       
CCDS80 RYLQLTQSELSSYHRKEKQLYLGMFG
         150       160       170 




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:33:25 2016 done: Fri Nov  4 00:33:25 2016
 Total Scan time:  2.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]