Result of FASTA (omim) for
pF1KA0197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0197, 1315 aa
1>>>pF1KA0197 1315 - 1315 aa - 1315 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5811+/-0.00051; mu= 21.0861+/- 0.032
mean_var=69.6980+/-14.172, 0's: 0 Z-trim(107.4): 37 B-trim: 377 in 2/50
Lambda= 0.153626
statistics sampled from 15457 (15473) to 15457 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.517), E-opt: 0.2 (0.181), width: 16
Scan time: 12.390
The best scores are: opt bits E(85289)
NP_056046 (OMIM: 607614) nuclear pore complex prot (1436) 8637 1924.7 0
NP_001305328 (OMIM: 607614) nuclear pore complex p ( 224) 900 209.6 2.1e-53
>>NP_056046 (OMIM: 607614) nuclear pore complex protein (1436 aa)
initn: 8715 init1: 8630 opt: 8637 Z-score: 10335.0 bits: 1924.7 E(85289): 0
Smith-Waterman score: 8637; 99.0% identity (99.2% similar) in 1310 aa overlap (2-1311:37-1341)
10 20 30
pF1KA0 MAAGALERSFVELSGAERERPRHFREFTVCS
::::::::::::::::::::::::::::::
NP_056 APPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
130 140 150 160 170 180
160 170 180 190 200 210
pF1KA0 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
190 200 210 220 230 240
220 230 240 250 260 270
pF1KA0 DIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KA0 KLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KA0 QFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEH
370 380 390 400 410 420
400 410 420 430 440 450
pF1KA0 NVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERN
430 440 450 460 470 480
460 470 480 490 500 510
pF1KA0 LDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KA0 ALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICL
550 560 570 580 590 600
580 590 600 610 620 630
pF1KA0 IKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIR
610 620 630 640 650 660
640 650 660 670 680 690
pF1KA0 NPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIAST
670 680 690 700 710 720
700 710 720 730 740 750
pF1KA0 RFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATD
730 740 750 760 770 780
760 770 780 790 800 810
pF1KA0 VPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAP
790 800 810 820 830 840
820 830 840 850 860 870
pF1KA0 LSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNV
850 860 870 880 890 900
880 890 900 910 920 930
pF1KA0 GSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKV
910 920 930 940 950 960
940 950 960 970 980 990
pF1KA0 LRLLDVIGLPELVIQLATSAITEASDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPD
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_056 LRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPD
970 980 990 1000 1010 1020
1000 1010 1020 1030 1040 1050
pF1KA0 SSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYA
1030 1040 1050 1060 1070 1080
1060 1070 1080 1090 1100 1110
pF1KA0 FHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPV
1090 1100 1110 1120 1130 1140
1120 1130 1140 1150 1160 1170
pF1KA0 SGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAV
1150 1160 1170 1180 1190 1200
1180 1190 1200 1210 1220 1230
pF1KA0 AGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWA
1210 1220 1230 1240 1250 1260
1240 1250 1260 1270 1280 1290
pF1KA0 WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLI
1270 1280 1290 1300 1310 1320
1300 1310
pF1KA0 NSHNIALSQKVDKATRDLLYRRTL
::. .::: : ::
NP_056 NSY-----KKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPM
1330 1340 1350 1360 1370 1380
>>NP_001305328 (OMIM: 607614) nuclear pore complex prote (224 aa)
initn: 900 init1: 900 opt: 900 Z-score: 1079.9 bits: 209.6 E(85289): 2.1e-53
Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 139 aa overlap (2-140:37-175)
10 20 30
pF1KA0 MAAGALERSFVELSGAERERPRHFREFTVCS
::::::::::::::::::::::::::::::
NP_001 APPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSVSWLSAISFIS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KA0 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
NP_001 QITLGVTNVVLERCLLELKEIWILVIPHQAYFDSYRLK
190 200 210 220
1315 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:12:51 2016 done: Thu Nov 3 09:12:53 2016
Total Scan time: 12.390 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]