FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0187, 1282 aa
  1>>>pF1KA0187 1282 - 1282 aa - 1282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4393+/-0.00119; mu= 9.2217+/- 0.072
 mean_var=188.8819+/-37.706, 0's: 0 Z-trim(108.3): 35  B-trim: 13 in 1/52
 Lambda= 0.093321
 statistics sampled from 10071 (10094) to 10071 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.31), width:  16
 Scan time:  5.780

The best scores are:                                      opt bits E(32554)
CCDS7199.1 BMS1 gene_id:9790|Hs108|chr10           (1282) 8516 1160.3       0


>>CCDS7199.1 BMS1 gene_id:9790|Hs108|chr10                (1282 aa)
 initn: 8516 init1: 8516 opt: 8516  Z-score: 6204.9  bits: 1160.3 E(32554):    0
Smith-Waterman score: 8516; 100.0% identity (100.0% similar) in 1282 aa overlap (1-1282:1-1282)

               10        20        30        40        50        60
pF1KA0 MEAKDQKKHRKKNSGPKAAKKKKRLLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MEAKDQKKHRKKNSGPKAAKKKKRLLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIQCLIRNFTRQKLTEIRGPVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIQCLIRNFTRQKLTEIRGPVTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 VSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEFLNICQVHGFPKIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEFLNICQVHGFPKIM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLFYLSGMVHGEYQNQEIHNLGRFIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLFYLSGMVHGEYQNQEIHNLGRFIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 VMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCDRKVSLYGYLRGAHLKNKSQIHMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCDRKVSLYGYLRGAHLKNKSQIHMP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 GVGDFAVSDISFLPDPCALPEQQKKRCLNEKEKLVYAPLSGVGGVLYDKDAVYVDLGGSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GVGDFAVSDISFLPDPCALPEQQKKRCLNEKEKLVYAPLSGVGGVLYDKDAVYVDLGGSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 VFQDEVGPTHELVQSLISTHSTIDAKMASSRVTLFSDSKPLGSEDIDNQGLMMPKEEKQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VFQDEVGPTHELVQSLISTHSTIDAKMASSRVTLFSDSKPLGSEDIDNQGLMMPKEEKQM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 DLNTGRMRRKAIFGDEDESGDSDDEEDDEMSEDDGLENGSSDEEAEEEENAEMTDQYMAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DLNTGRMRRKAIFGDEDESGDSDDEEDDEMSEDDGLENGSSDEEAEEEENAEMTDQYMAV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 KGIKRRKLELEEDSEMDLPAFADSDDDLERSSAEEGEAEEADESSEEEDCTAGEKGISGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KGIKRRKLELEEDSEMDLPAFADSDDDLERSSAEEGEAEEADESSEEEDCTAGEKGISGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 KAAGEGSKAGLSPANCQSDRVNLEKSLLMKKAALPTFDSGHCTAEEVFASEDESEESSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KAAGEGSKAGLSPANCQSDRVNLEKSLLMKKAALPTFDSGHCTAEEVFASEDESEESSSL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 SAEEEDSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLKEEEDYKEENNDSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SAEEEDSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLKEEEDYKEENNDSKE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 TSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRVNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRVNQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 PDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEELY
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 GDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEY
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 DEGESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DEGESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 FDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 DHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 IKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 IKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 AFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 AFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHG
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 VRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRPAVIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRPAVIR
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 EPHERKILALLDALSTVHSQKMKKAKEQRHLHNKEHFRAKQKEEEEKLKRQKDLRKKLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 EPHERKILALLDALSTVHSQKMKKAKEQRHLHNKEHFRAKQKEEEEKLKRQKDLRKKLFR
             1210      1220      1230      1240      1250      1260

             1270      1280  
pF1KA0 IQGQKERRNQKSSLKGAEGQLQ
       ::::::::::::::::::::::
CCDS71 IQGQKERRNQKSSLKGAEGQLQ
             1270      1280  




1282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:12:03 2016 done: Thu Nov  3 09:12:03 2016
 Total Scan time:  5.780 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]