Result of FASTA (ccds) for
pF1KA0185
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0185, 1871 aa
1>>>pF1KA0185 1871 - 1871 aa - 1871 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5783+/-0.00137; mu= 15.4456+/- 0.082
mean_var=189.6920+/-38.858, 0's: 0 Z-trim(104.2): 51 B-trim: 0 in 0/52
Lambda= 0.093121
statistics sampled from 7765 (7784) to 7765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.239), width: 16
Scan time: 6.570
The best scores are: opt bits E(32554)
CCDS31276.1 PDCD11 gene_id:22984|Hs108|chr10 (1871) 12122 1643.4 0
>>CCDS31276.1 PDCD11 gene_id:22984|Hs108|chr10 (1871 aa)
initn: 12122 init1: 12122 opt: 12122 Z-score: 8809.8 bits: 1643.4 E(32554): 0
Smith-Waterman score: 12122; 99.9% identity (100.0% similar) in 1871 aa overlap (1-1871:1-1871)
10 20 30 40 50 60
pF1KA0 MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 KRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 CIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 CQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 PGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 KNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 AKVTNVDEEKQRMLLSLRLSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AKVTNVDEEKQRMLLSLRLSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 AEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVD
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 LLKLEVHVSLHQDLVNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLKLEVHVSLHQDLVNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 DTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVD
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 PALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 KLKVGKTVTARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLKVGKTVTARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPM
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 EKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 QALRATVVGPDSSKTFLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSI
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 FHMSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FHMSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTAR
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 VLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQKRNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQKRNE
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 KKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECRESGSEQERVSKKPKKAGLSEEDDSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECRESGSEQERVSKKPKKAGLSEEDDSLV
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 DVYYREGKEEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DVYYREGKEEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSE
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 EDEKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDEKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSI
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 FERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQ
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 AAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSV
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 YIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE
1810 1820 1830 1840 1850 1860
1870
pF1KA0 YVEAKSSVLED
:::::::::::
CCDS31 YVEAKSSVLED
1870
1871 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:20:53 2016 done: Wed Nov 2 18:20:54 2016
Total Scan time: 6.570 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]