Result of FASTA (omim) for
pF1KA0179
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0179, 740 aa
1>>>pF1KA0179 740 - 740 aa - 740 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6743+/-0.000417; mu= -4.6861+/- 0.026
mean_var=300.3129+/-60.248, 0's: 0 Z-trim(120.9): 37 B-trim: 35 in 1/55
Lambda= 0.074009
statistics sampled from 36615 (36664) to 36615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.43), width: 16
Scan time: 12.220
The best scores are: opt bits E(85289)
NP_055871 (OMIM: 610654) ribosomal RNA processing ( 758) 4560 501.0 7.4e-141
NP_003674 (OMIM: 610653) ribosomal RNA processing ( 461) 984 119.0 4.4e-26
XP_016883974 (OMIM: 610653) PREDICTED: ribosomal R ( 415) 963 116.7 1.9e-25
XP_016883975 (OMIM: 610653) PREDICTED: ribosomal R ( 311) 609 78.8 3.6e-14
>>NP_055871 (OMIM: 610654) ribosomal RNA processing prot (758 aa)
initn: 4560 init1: 4560 opt: 4560 Z-score: 2649.8 bits: 501.0 E(85289): 7.4e-141
Smith-Waterman score: 4825; 97.5% identity (97.5% similar) in 758 aa overlap (1-740:1-758)
10 20 30 40 50
pF1KA0 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELL--------
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFY
10 20 30 40 50 60
60 70 80 90 100
pF1KA0 ----------QEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA0 IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA0 GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KA0 DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY
250 260 270 280 290 300
290 300 310 320 330 340
pF1KA0 KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 PSLEQNRGREPEASGPKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA0 AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA0 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA0 SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK
670 680 690 700 710 720
710 720 730 740
pF1KA0 PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF
::::::::::::::::::::::::::::::::::::::
NP_055 PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF
730 740 750
>>NP_003674 (OMIM: 610653) ribosomal RNA processing prot (461 aa)
initn: 986 init1: 745 opt: 984 Z-score: 589.3 bits: 119.0 E(85289): 4.4e-26
Smith-Waterman score: 1156; 43.4% identity (70.6% similar) in 472 aa overlap (7-456:8-459)
10 20 30 40 50
pF1KA0 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELL-------
: :::.:::::..:. :::::.:::.:: ..::: .:::...:::
NP_003 MVSRVQLPPEIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLF
10 20 30 40 50 60
60 70 80 90 100
pF1KA0 -----------QEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYM
::::. ::.::::: ... :::::.:.::::::::: :::::::::.::
NP_003 YCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA0 LIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKV
:.:.:: .:..::: .:::: .:. .:..:: :.: : ::.::::. :::.:.:.::.::
NP_003 LMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA0 GGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKV
:..:: ::::::::::::.:::.::: ....:.::.::.::.:.:.. :. ..: :.
NP_003 GAEELTADQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIEDLLNELDTQ-
190 200 210 220 230
230 240 250 260 270
pF1KA0 GDGDLSAEEIPENEVSLR-RAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTG-PLLQ
: ..... .: . : :.:.:.. : . : :... : .:.: :.::
NP_003 -DEEVASDSDESSEGGERGDALSQKRSEKPPAGSICRA-EPEAGEEQAGDDRDSGGPVLQ
240 250 260 270 280 290
280 290 300 310 320 330
pF1KA0 FDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQI
:::.:::.::.::.::..:: ::::: :.:.:.:::. : : :: .. .
NP_003 FDYEAVANRLFEMASRQSTPSQNRKRLYKVIRKLQDLAGGI------FPEDEIPEKACRR
300 310 320 330 340 350
340 350 360 370 380 390
pF1KA0 LSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPG
: .:...:: .: . :..:.:. :.. : ..:.:.... .:: . .
NP_003 LLEGRRQKKTKKQKRLLRLQQERGKG-----EKEPPSPGMERKRSRRRGVGADPEARAEA
360 370 380 390 400
400 410 420 430 440 450
pF1KA0 GAAP-SLEQNRGRE-PEASGPKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRP
: : . :. :. :.. : .. . : : ::. .. .. ..: ..:.::
NP_003 GEQPGTAERALLRDQPRGRGQRGARQRRRTP-RPLTSARAKAANVQEP-----EKKKKRR
410 420 430 440 450 460
460 470 480 490 500 510
pF1KA0 RKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGS
NP_003 E
>>XP_016883974 (OMIM: 610653) PREDICTED: ribosomal RNA p (415 aa)
initn: 1139 init1: 745 opt: 963 Z-score: 577.9 bits: 116.7 E(85289): 1.9e-25
Smith-Waterman score: 1100; 48.9% identity (74.7% similar) in 376 aa overlap (7-362:8-374)
10 20 30 40 50
pF1KA0 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELL-------
: :::.:::::..:. :::::.:::.:: ..::: .:::...:::
XP_016 MVSRVQLPPEIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLF
10 20 30 40 50 60
60 70 80 90 100
pF1KA0 -----------QEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYM
::::. ::.::::: ... :::::.:.::::::::: :::::::::.::
XP_016 YCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA0 LIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKV
:.:.:: .:..::: .:::: .:. .:..:: :.: : ::.::::. :::.:.:.::.::
XP_016 LMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA0 GGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKV
:..:: ::::::::::::.:::.::: ....:.::.::.::.:.:.. :. ..: :.
XP_016 GAEELTADQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIEDLLNELDTQ-
190 200 210 220 230
230 240 250 260 270
pF1KA0 GDGDLSAEEIPENEVSLR-RAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTG-PLLQ
: ..... .: . : :.:.:.. : . : :... : .:.: :.::
XP_016 -DEEVASDSDESSEGGERGDALSQKRSEKPPAGSICRA-EPEAGEEQAGDDRDSGGPVLQ
240 250 260 270 280 290
280 290 300 310 320 330
pF1KA0 FDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQI
:::.:::.::.::.::..:: ::::: :.:.:.:::. : : :: .. .
XP_016 FDYEAVANRLFEMASRQSTPSQNRKRLYKVIRKLQDLAGGI------FPEDEIPEKACRR
300 310 320 330 340 350
340 350 360 370 380 390
pF1KA0 LSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPG
: .:...:: .: . :..:.
XP_016 LLEGRRQKKTKKQKRLLRLQQERALAEVLSRVDGAWRPHWTRDASGWLLWPCCPPRSVVL
360 370 380 390 400 410
>>XP_016883975 (OMIM: 610653) PREDICTED: ribosomal RNA p (311 aa)
initn: 634 init1: 370 opt: 609 Z-score: 375.4 bits: 78.8 E(85289): 3.6e-14
Smith-Waterman score: 644; 37.8% identity (67.1% similar) in 331 aa overlap (132-456:1-309)
110 120 130 140 150 160
pF1KA0 LIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKV
: :.: : ::.::::. :::.:.:.::.::
XP_016 MTEILHPSSQAPNGVKSHFIEIFLEELTKV
10 20 30
170 180 190 200 210 220
pF1KA0 GGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKV
:..:: ::::::::::::.:::.::: ....:.::.::.::.:.:.. :. ..: :.
XP_016 GAEELTADQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIEDLLNELDTQ-
40 50 60 70 80
230 240 250 260 270
pF1KA0 GDGDLSAEEIPENEVSLR-RAVSKKKTALGKNHS--RKDGLSDERGRDDCGTFEDTG-PL
: ..... .: . : :.:.:.. : : . : :... : .:.: :.
XP_016 -DEEVASDSDESSEGGERGDALSQKRSEKPPAGSICRAE---PEAGEEQAGDDRDSGGPV
90 100 110 120 130 140
280 290 300 310 320 330
pF1KA0 LQFDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDD
:::::.:::.::.::.::..:: ::::: :.:.:.:::. : : :: ..
XP_016 LQFDYEAVANRLFEMASRQSTPSQNRKRLYKVIRKLQDLAGGI------FPEDEIPEKAC
150 160 170 180 190
340 350 360 370 380 390
pF1KA0 QILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPG
. : .:...:: .: . :..:.:. :.. : ..:.:.... .:: .
XP_016 RRLLEGRRQKKTKKQKRLLRLQQERGKG-----EKEPPSPGMERKRSRRRGVGADPEARA
200 210 220 230 240 250
400 410 420 430 440 450
pF1KA0 PGGAAP-SLEQNRGRE-PEASGPKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRK
.: : . :. :. :.. : .. . : : ::. .. .. ..: ..:.:
XP_016 EAGEQPGTAERALLRDQPRGRGQRGARQRRRTP-RPLTSARAKAANVQEP-----EKKKK
260 270 280 290 300
460 470 480 490 500 510
pF1KA0 RPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVN
:
XP_016 RRE
310
740 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:10:05 2016 done: Thu Nov 3 09:10:07 2016
Total Scan time: 12.220 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]