Result of FASTA (ccds) for
pF1KA0179
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0179, 740 aa
1>>>pF1KA0179 740 - 740 aa - 740 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9727+/-0.000929; mu= -0.3438+/- 0.056
mean_var=236.4118+/-48.212, 0's: 0 Z-trim(113.3): 24 B-trim: 151 in 2/51
Lambda= 0.083414
statistics sampled from 13916 (13935) to 13916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.428), width: 16
Scan time: 4.750
The best scores are: opt bits E(32554)
CCDS33577.1 RRP1B gene_id:23076|Hs108|chr21 ( 758) 4560 562.0 1.2e-159
CCDS42951.1 RRP1 gene_id:8568|Hs108|chr21 ( 461) 984 131.5 2.8e-30
>>CCDS33577.1 RRP1B gene_id:23076|Hs108|chr21 (758 aa)
initn: 4560 init1: 4560 opt: 4560 Z-score: 2979.6 bits: 562.0 E(32554): 1.2e-159
Smith-Waterman score: 4825; 97.5% identity (97.5% similar) in 758 aa overlap (1-740:1-758)
10 20 30 40 50
pF1KA0 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELL--------
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFY
10 20 30 40 50 60
60 70 80 90 100
pF1KA0 ----------QEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA0 IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA0 GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KA0 DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY
250 260 270 280 290 300
290 300 310 320 330 340
pF1KA0 KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 PSLEQNRGREPEASGPKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA0 AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA0 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA0 SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK
670 680 690 700 710 720
710 720 730 740
pF1KA0 PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF
::::::::::::::::::::::::::::::::::::::
CCDS33 PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF
730 740 750
>>CCDS42951.1 RRP1 gene_id:8568|Hs108|chr21 (461 aa)
initn: 986 init1: 745 opt: 984 Z-score: 657.0 bits: 131.5 E(32554): 2.8e-30
Smith-Waterman score: 1156; 43.4% identity (70.6% similar) in 472 aa overlap (7-456:8-459)
10 20 30 40 50
pF1KA0 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELL-------
: :::.:::::..:. :::::.:::.:: ..::: .:::...:::
CCDS42 MVSRVQLPPEIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLF
10 20 30 40 50 60
60 70 80 90 100
pF1KA0 -----------QEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYM
::::. ::.::::: ... :::::.:.::::::::: :::::::::.::
CCDS42 YCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA0 LIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKV
:.:.:: .:..::: .:::: .:. .:..:: :.: : ::.::::. :::.:.:.::.::
CCDS42 LMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA0 GGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKV
:..:: ::::::::::::.:::.::: ....:.::.::.::.:.:.. :. ..: :.
CCDS42 GAEELTADQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIEDLLNELDTQ-
190 200 210 220 230
230 240 250 260 270
pF1KA0 GDGDLSAEEIPENEVSLR-RAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTG-PLLQ
: ..... .: . : :.:.:.. : . : :... : .:.: :.::
CCDS42 -DEEVASDSDESSEGGERGDALSQKRSEKPPAGSICRA-EPEAGEEQAGDDRDSGGPVLQ
240 250 260 270 280 290
280 290 300 310 320 330
pF1KA0 FDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQI
:::.:::.::.::.::..:: ::::: :.:.:.:::. : : :: .. .
CCDS42 FDYEAVANRLFEMASRQSTPSQNRKRLYKVIRKLQDLAGGI------FPEDEIPEKACRR
300 310 320 330 340 350
340 350 360 370 380 390
pF1KA0 LSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPG
: .:...:: .: . :..:.:. :.. : ..:.:.... .:: . .
CCDS42 LLEGRRQKKTKKQKRLLRLQQERGKG-----EKEPPSPGMERKRSRRRGVGADPEARAEA
360 370 380 390 400
400 410 420 430 440 450
pF1KA0 GAAP-SLEQNRGRE-PEASGPKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRP
: : . :. :. :.. : .. . : : ::. .. .. ..: ..:.::
CCDS42 GEQPGTAERALLRDQPRGRGQRGARQRRRTP-RPLTSARAKAANVQEP-----EKKKKRR
410 420 430 440 450 460
460 470 480 490 500 510
pF1KA0 RKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGS
CCDS42 E
740 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:10:05 2016 done: Thu Nov 3 09:10:05 2016
Total Scan time: 4.750 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]