Result of FASTA (omim) for
pF1KA0156
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0156, 963 aa
1>>>pF1KA0156 963 - 963 aa - 963 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2119+/-0.000478; mu= 16.7820+/- 0.031
mean_var=246.5675+/-52.726, 0's: 0 Z-trim(117.5): 152 B-trim: 2888 in 2/57
Lambda= 0.081678
statistics sampled from 29396 (29554) to 29396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.347), width: 16
Scan time: 11.050
The best scores are: opt bits E(85289)
NP_055521 (OMIM: 611684) squamous cell carcinoma a ( 963) 6378 765.9 0
XP_005269298 (OMIM: 611684) PREDICTED: squamous ce ( 981) 4797 579.6 2.6e-164
XP_011537328 (OMIM: 611684) PREDICTED: squamous ce ( 675) 4398 532.4 3e-150
XP_016881348 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 455) 261 44.7 0.0013
XP_016881344 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 261 44.7 0.0013
XP_016881347 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 261 44.7 0.0013
XP_016881334 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 483) 261 44.7 0.0014
NP_001317532 (OMIM: 612679) CUGBP Elav-like family ( 484) 261 44.7 0.0014
XP_005258365 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 484) 261 44.7 0.0014
XP_011524386 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 261 44.7 0.0014
XP_016881345 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 257 44.2 0.0018
XP_016881343 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 457) 257 44.2 0.0018
XP_016881342 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 457) 257 44.2 0.0018
XP_016881333 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 484) 257 44.2 0.0019
XP_011524392 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 485) 257 44.2 0.0019
XP_016881331 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 485) 257 44.2 0.0019
XP_011524387 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 257 44.3 0.002
XP_011524385 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 505) 257 44.3 0.002
XP_016882314 (OMIM: 160994) PREDICTED: heterogeneo ( 658) 253 44.0 0.0032
XP_016882313 (OMIM: 160994) PREDICTED: heterogeneo ( 673) 253 44.0 0.0032
XP_005272537 (OMIM: 160994) PREDICTED: heterogeneo ( 676) 253 44.0 0.0032
NP_112480 (OMIM: 160994) heterogeneous nuclear rib ( 691) 253 44.0 0.0033
XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 249 43.3 0.0035
XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 249 43.3 0.0035
XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 249 43.3 0.0035
XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 249 43.3 0.0036
XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 249 43.3 0.0036
XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494) 249 43.3 0.0037
XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 244 42.6 0.005
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 241 42.4 0.0076
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 241 42.4 0.0076
XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 239 42.1 0.0079
XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 239 42.1 0.0079
XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454) 239 42.1 0.008
XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473) 239 42.1 0.0082
XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 239 42.1 0.0082
XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 239 42.1 0.0082
NP_733829 (OMIM: 607430) DAZ-associated protein 1 ( 378) 236 41.6 0.0092
XP_016882070 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 236 41.7 0.0096
NP_061832 (OMIM: 607430) DAZ-associated protein 1 ( 407) 236 41.7 0.0096
>>NP_055521 (OMIM: 611684) squamous cell carcinoma antig (963 aa)
initn: 6378 init1: 6378 opt: 6378 Z-score: 4077.8 bits: 765.9 E(85289): 0
Smith-Waterman score: 6378; 100.0% identity (100.0% similar) in 963 aa overlap (1-963:1-963)
10 20 30 40 50 60
pF1KA0 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF
910 920 930 940 950 960
pF1KA0 LRK
:::
NP_055 LRK
>>XP_005269298 (OMIM: 611684) PREDICTED: squamous cell c (981 aa)
initn: 4789 init1: 4789 opt: 4797 Z-score: 3070.9 bits: 579.6 E(85289): 2.6e-164
Smith-Waterman score: 6332; 98.2% identity (98.2% similar) in 981 aa overlap (1-963:1-981)
10 20 30 40 50 60
pF1KA0 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
190 200 210 220 230 240
250 260 270 280
pF1KA0 AAR------------------LEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVI
::: :::::::::::::::::::::::::::::::::::::::
XP_005 AARPVAGFLSPFDREQTFDSQLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVI
250 260 270 280 290 300
290 300 310 320 330 340
pF1KA0 QNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 VPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVT
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 FEKALNAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FEKALNAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEE
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 RFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHG
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA0 DTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMK
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA0 AAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPS
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA0 KRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKD
670 680 690 700 710 720
710 720 730 740 750 760
pF1KA0 SITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQA
730 740 750 760 770 780
770 780 790 800 810 820
pF1KA0 LEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICK
790 800 810 820 830 840
830 840 850 860 870 880
pF1KA0 AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRK
850 860 870 880 890 900
890 900 910 920 930 940
pF1KA0 VPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAA
910 920 930 940 950 960
950 960
pF1KA0 PAATEAPKMSNADFAKLFLRK
:::::::::::::::::::::
XP_005 PAATEAPKMSNADFAKLFLRK
970 980
>>XP_011537328 (OMIM: 611684) PREDICTED: squamous cell c (675 aa)
initn: 4398 init1: 4398 opt: 4398 Z-score: 2818.5 bits: 532.4 E(85289): 3e-150
Smith-Waterman score: 4398; 100.0% identity (100.0% similar) in 661 aa overlap (303-963:15-675)
280 290 300 310 320 330
pF1KA0 SEDPIPESVIQNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLI
::::::::::::::::::::::::::::::
XP_011 MCPSPIASSSLSRELQAEAPRLAEYQAYIDFEMKIGDPARIQLI
10 20 30 40
340 350 360 370 380 390
pF1KA0 FERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLAMERH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLAMERH
50 60 70 80 90 100
400 410 420 430 440 450
pF1KA0 GVDHQVISVTFEKALNAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELEELRAAFTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVDHQVISVTFEKALNAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELEELRAAFTRA
110 120 130 140 150 160
460 470 480 490 500 510
pF1KA0 LEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGNAKYANMWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGNAKYANMWL
170 180 190 200 210 220
520 530 540 550 560 570
pF1KA0 EYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETR
230 240 250 260 270 280
580 590 600 610 620 630
pF1KA0 LARVNEQRMKAAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LARVNEQRMKAAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKE
290 300 310 320 330 340
640 650 660 670 680 690
pF1KA0 WGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDM
350 360 370 380 390 400
700 710 720 730 740 750
pF1KA0 PKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVE
410 420 430 440 450 460
760 770 780 790 800 810
pF1KA0 FKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSC
470 480 490 500 510 520
820 830 840 850 860 870
pF1KA0 TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK
530 540 550 560 570 580
880 890 900 910 920 930
pF1KA0 VAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAAAPQAEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAAAPQAEN
590 600 610 620 630 640
940 950 960
pF1KA0 GPAAAPAVAAPAATEAPKMSNADFAKLFLRK
:::::::::::::::::::::::::::::::
XP_011 GPAAAPAVAAPAATEAPKMSNADFAKLFLRK
650 660 670
>>XP_016881348 (OMIM: 612679) PREDICTED: CUGBP Elav-like (455 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.7 bits: 44.7 E(85289): 0.0013
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
XP_016 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
XP_016 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
XP_016 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
XP_016 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
XP_016 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
XP_016 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
XP_016 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
>>XP_016881344 (OMIM: 612679) PREDICTED: CUGBP Elav-like (456 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.7 bits: 44.7 E(85289): 0.0013
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
XP_016 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
XP_016 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
XP_016 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
XP_016 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
XP_016 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
XP_016 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
XP_016 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
>>XP_016881347 (OMIM: 612679) PREDICTED: CUGBP Elav-like (456 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.7 bits: 44.7 E(85289): 0.0013
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
XP_016 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
XP_016 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
XP_016 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
XP_016 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
XP_016 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
XP_016 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
XP_016 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
>>XP_016881334 (OMIM: 612679) PREDICTED: CUGBP Elav-like (483 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.4 bits: 44.7 E(85289): 0.0014
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
XP_016 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
XP_016 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
XP_016 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
XP_016 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
XP_016 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
XP_016 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
XP_016 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
>>NP_001317532 (OMIM: 612679) CUGBP Elav-like family mem (484 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.4 bits: 44.7 E(85289): 0.0014
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
NP_001 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
NP_001 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
NP_001 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
NP_001 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
NP_001 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
NP_001 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
NP_001 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
>>XP_005258365 (OMIM: 612679) PREDICTED: CUGBP Elav-like (484 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.4 bits: 44.7 E(85289): 0.0014
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
XP_005 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
XP_005 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
XP_005 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
XP_005 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
XP_005 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
XP_005 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
XP_005 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
>>XP_011524386 (OMIM: 612679) PREDICTED: CUGBP Elav-like (504 aa)
initn: 109 init1: 50 opt: 261 Z-score: 185.2 bits: 44.7 E(85289): 0.0014
Smith-Waterman score: 267; 22.9% identity (58.8% similar) in 328 aa overlap (653-952:9-324)
630 640 650 660 670 680
pF1KA0 RGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNVEVAAGPAGKCAAVDVEPPSKQK
: :...:. .... :. : : .
XP_011 MYIKMATLANGQADNASLSTNGLGSS------PGSAGH
10 20 30
690 700 710 720 730 740
pF1KA0 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR
.. : . :... ...:.: .:....: ...: : :.:::: :.. .. ....:
XP_011 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKD--LKPLFEEFGKIYELT-VLKDR
40 50 60 70 80
750 760 770 780 790
pF1KA0 --GDFRGYCYVEFKEEKSALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYST
: .: .. . :..:::.: ..:.. : ::. :.: ..:.. . . .:
XP_011 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS-SCLRQPP
90 100 110 120 130 140
800 810 820 830 840 850
pF1KA0 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ
: ..:::.. : . ........ .: :.... .. . :. :: :.:.: ....:.
XP_011 S--HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA
150 160 170 180 190 200
860 870 880 890 900
pF1KA0 AVMKMDG---MTIKENIIKVAISNPPQRKVPEKPETRKAPGG---PMLLP-QTYGARGKG
:. . : : . . : ... .... .. . . : :: .: .::: ...
XP_011 AINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA
210 220 230 240 250 260
910 920 930 940 950
pF1KA0 --RTQLSLLPRALQ----RPSAAAPQAE---------NGPAAAPAVAAPAATEAPKMSNA
. : .:. . : : :: :. :: :::: . . ... : ..
XP_011 LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAP
270 280 290 300 310 320
960
pF1KA0 DFAKLFLRK
XP_011 AVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYA
330 340 350 360 370 380
963 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:17:51 2016 done: Wed Nov 2 18:17:53 2016
Total Scan time: 11.050 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]