FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0156, 963 aa
  1>>>pF1KA0156 963 - 963 aa - 963 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8693+/-0.00111; mu= 12.5610+/- 0.068
 mean_var=226.9770+/-46.893, 0's: 0 Z-trim(110.2): 57  B-trim: 552 in 1/52
 Lambda= 0.085130
 statistics sampled from 11393 (11441) to 11393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.351), width:  16
 Scan time:  4.210

The best scores are:                                      opt bits E(32554)
CCDS9117.1 SART3 gene_id:9733|Hs108|chr12          ( 963) 6378 797.3       0


>>CCDS9117.1 SART3 gene_id:9733|Hs108|chr12               (963 aa)
 initn: 6378 init1: 6378 opt: 6378  Z-score: 4247.4  bits: 797.3 E(32554):    0
Smith-Waterman score: 6378; 100.0% identity (100.0% similar) in 963 aa overlap (1-963:1-963)

               10        20        30        40        50        60
pF1KA0 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF
              910       920       930       940       950       960

          
pF1KA0 LRK
       :::
CCDS91 LRK
          




963 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:17:50 2016 done: Wed Nov  2 18:17:51 2016
 Total Scan time:  4.210 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]