Result of FASTA (ccds) for
pF1KA0129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0129, 442 aa
1>>>pF1KA0129 442 - 442 aa - 442 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2684+/-0.000837; mu= 13.6205+/- 0.050
mean_var=106.4625+/-21.328, 0's: 0 Z-trim(109.5): 118 B-trim: 40 in 1/53
Lambda= 0.124301
statistics sampled from 10786 (10910) to 10786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.335), width: 16
Scan time: 3.310
The best scores are: opt bits E(32554)
CCDS6734.1 TRIM14 gene_id:9830|Hs108|chr9 ( 442) 3024 553.0 2.2e-157
CCDS11171.1 TRIM16 gene_id:10626|Hs108|chr17 ( 564) 394 81.4 2.5e-15
CCDS4463.1 TRIM7 gene_id:81786|Hs108|chr5 ( 303) 330 69.8 4.4e-12
CCDS43414.1 TRIM7 gene_id:81786|Hs108|chr5 ( 329) 330 69.8 4.7e-12
CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 ( 511) 330 69.9 6.6e-12
CCDS11591.1 TRIM25 gene_id:7706|Hs108|chr17 ( 630) 325 69.1 1.4e-11
CCDS56405.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 466) 323 68.6 1.5e-11
CCDS56403.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 313) 320 68.0 1.6e-11
CCDS4613.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 527) 323 68.7 1.6e-11
CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 ( 354) 320 68.0 1.7e-11
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 322 68.5 1.8e-11
CCDS376.1 TRIM62 gene_id:55223|Hs108|chr1 ( 475) 321 68.3 1.9e-11
CCDS4607.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 407) 320 68.1 1.9e-11
CCDS4606.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 523) 320 68.1 2.3e-11
CCDS475.1 ERMAP gene_id:114625|Hs108|chr1 ( 475) 315 67.2 4e-11
CCDS32737.1 TRIM47 gene_id:91107|Hs108|chr17 ( 638) 311 66.6 8.3e-11
>>CCDS6734.1 TRIM14 gene_id:9830|Hs108|chr9 (442 aa)
initn: 3024 init1: 3024 opt: 3024 Z-score: 2939.1 bits: 553.0 E(32554): 2.2e-157
Smith-Waterman score: 3024; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)
10 20 30 40 50 60
pF1KA0 MAGAATGSRTPGRSELVEGCGWRCPEHGDRVAELFCRRCRRCVCALCPVLGAHRGHPVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAGAATGSRTPGRSELVEGCGWRCPEHGDRVAELFCRRCRRCVCALCPVLGAHRGHPVGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 ALEAAVHVQKLSQECLKQLAIKKQQHIDNITQIEDATEKLKANAESSKTWLKGKFTELRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ALEAAVHVQKLSQECLKQLAIKKQQHIDNITQIEDATEKLKANAESSKTWLKGKFTELRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LLDEEEALAKKFIDKNTQLTLQVYREQADSCREQLDIMNDLSNRVWSISQEPDPVQRLQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LLDEEEALAKKFIDKNTQLTLQVYREQADSCREQLDIMNDLSNRVWSISQEPDPVQRLQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YTATEQEMQQQMSLGELCHPVPLSFEPVKSFFKGLVEAVESTLQTPLDIRLKESINCQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YTATEQEMQQQMSLGELCHPVPLSFEPVKSFFKGLVEAVESTLQTPLDIRLKESINCQLS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 DPSSTKPGTLLKTSPSPERSLLLKYARTPTLDPDTMHARLRLSADRLTVRCGLLGSLGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DPSSTKPGTLLKTSPSPERSLLLKYARTPTLDPDTMHARLRLSADRLTVRCGLLGSLGPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 PVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLRRRGASAAARLGCNRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLRRRGASAAARLGCNRQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 SWCLKRYDLEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAGVLAFYDVTGGMSHLHTFRAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 SWCLKRYDLEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAGVLAFYDVTGGMSHLHTFRAT
370 380 390 400 410 420
430 440
pF1KA0 FQEPLYPALRLWEGAISIPRLP
::::::::::::::::::::::
CCDS67 FQEPLYPALRLWEGAISIPRLP
430 440
>>CCDS11171.1 TRIM16 gene_id:10626|Hs108|chr17 (564 aa)
initn: 198 init1: 80 opt: 394 Z-score: 388.7 bits: 81.4 E(32554): 2.5e-15
Smith-Waterman score: 412; 26.7% identity (55.4% similar) in 453 aa overlap (14-438:120-545)
10 20 30 40
pF1KA0 MAGAATGSRTPGRSELVEGCGWR-CPEHGDRVAELFCRRCRRC
.: :. .:: :: : . .. :: ..:
CCDS11 VKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCPAHHSPLSA-FCCPDQQC
90 100 110 120 130 140
50 60 70 80 90 100
pF1KA0 VCALCPVLGAHRGHPVGLALEAAVHVQKLSQECLKQLAIKKQQHIDNITQIEDATEKLKA
.: : : :: . ..:.:: . .. .: :: .... ... :.: .:.:
CCDS11 ICQDC--CQEHSGHTI-VSLDAARRDKEAELQCT-QLDLERKLKLN-----ENAISRLQA
150 160 170 180 190
110 120 130 140 150
pF1KA0 NAES---SKTWLKG----KFTELRLLLDEEEALAKKFIDKNTQLTLQVYREQADSCREQL
: .: : . .:. .: :: . . .: . :.... : .:. ::.. . .:
CCDS11 NQKSVLVSVSEVKAVAEMQFGELLAAVRKAQANVMLFLEEKEQAALS----QANGIKAHL
200 210 220 230 240 250
160 170 180 190 200 210
pF1KA0 DIMNDLSNRVWSISQEPDPVQRLQAYTATEQEMQQQMSLGELCH-PVPLSFEPVKSFFKG
. : . . . ..:. : . : : ... .. . : . .:. ..:
CCDS11 EY------RSAEMEKSKQELERMAAISNTVQFLEEYCKFKNTEDITFPSVYVGLKDKLSG
260 270 280 290 300
220 230 240 250 260
pF1KA0 LVEAV-ESTLQTPLDIRLKESINCQLSDPSS-------TKPGTLLK-----TSPSPE-RS
. ... :::.. :.: :. . .:.. :. :. ..... ..: : :
CCDS11 IRKVITESTVHL---IQLLENYKKKLQEFSKEEEYDIRTQVSAVVQRKYWTSKPEPSTRE
310 320 330 340 350 360
270 280 290 300 310
pF1KA0 LLLKYARTPTLDPDTMHARLRLSADRLTVRCGLLGSLGPVPVL--RFDALWQVLARDCFA
.:.:: :.:::: : :::. . : . : : : :: :::... .
CCDS11 QFLQYAYDITFDPDTAHKYLRLQEENRKVT-NTTPWEHPYPDLPSRFLHWRQVLSQQSLY
370 380 390 400 410 420
320 330 340 350 360 370
pF1KA0 TGRHYWEVDVQEAGAGWWVGAAYASLRRRGASAAARLGCNRQSWCLKRYDLEYWAFHDGQ
:.:.::.. ::: .:: . .. :.: . .. : :: :. :. :... .
CCDS11 LHRYYFEVEI--FGAGTYVGLTCKGIDRKGEERNSCISGNNFSWSLQWNGKEFTAWYSDM
430 440 450 460 470 480
380 390 400 410 420 430
pF1KA0 RSRLRPRDDLDRLGVFLDYEAGVLAFYDVT-GGMSHLHTFRATFQEPLYPALRL--WEGA
.. :. . ::::..:. .:.:.:: : :. .: : :.::.: :. : :.:
CCDS11 ETPLKA-GPFRRLGVYIDFPGGILSFYGVEYDTMTLVHKFACKFSEPVYAAFWLSKKENA
490 500 510 520 530 540
440
pF1KA0 ISIPRLP
: :
CCDS11 IRIVDLGEEPEKPAPSLVGTAP
550 560
>>CCDS4463.1 TRIM7 gene_id:81786|Hs108|chr5 (303 aa)
initn: 283 init1: 155 opt: 330 Z-score: 330.4 bits: 69.8 E(32554): 4.4e-12
Smith-Waterman score: 342; 30.6% identity (54.8% similar) in 330 aa overlap (104-427:3-288)
80 90 100 110 120 130
pF1KA0 ECLKQLAIKKQQHIDNITQIEDATEKLKANAESSKTWLKGKFTELRLLLDEEEALAKKFI
::. : . ..: :: .: :.:. ...
CCDS44 MAAEQEK--VGAEFQALRAFLVEQEG---RLL
10 20
140 150 160 170 180
pF1KA0 DKNTQLTLQVYREQADSCREQLDI----MNDLSNRVWSISQEPDPVQRLQAYTATEQEMQ
. .:. .: ..: .. :: . .. ::... .:.:: .. :: . .: ..
CCDS44 GRLEELSREVAQKQNENL-AQLGVEITQLSKLSSQIQETAQKPD-LDFLQEFKSTLSR--
30 40 50 60 70 80
190 200 210 220 230 240
pF1KA0 QQMSLGELCHPVPLSFEPVKSFFKGLVEAVESTLQTPL-DIRLKESINCQLSDPSSTKPG
: :: . .:. .: : ... . .. :: . :.
CCDS44 --------CSNVP-GPKPT---------TVSSEMKNKVWNVSLKTFV---LKG-------
90 100 110
250 260 270 280 290 300
pF1KA0 TLLKTSPSPERSLLLKYARTP-TLDPDTMHARLRLSADRLTVRCGLLGSLGPVPVLRFDA
.:: :. : : .. :::::: . :: :: : :: : .. : :::.
CCDS44 -MLKKFKEDLRGELEKEEKVELTLDPDTANPRLILSLDLKGVRLGERAQDLPNHPCRFDT
120 130 140 150 160 170
310 320 330 340 350 360
pF1KA0 LWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLRRRGASAAARLGCNRQSWCLKRY
.::: :..:::.:::.: . :: :.: :.::.: . . .. : :.
CCDS44 NTRVLASCGFSSGRHHWEVEVG-SKDGWAFGVARESVRRKGLTP---FTPEEGVWALQLN
180 190 200 210 220 230
370 380 390 400 410 420
pF1KA0 DLEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYP
.::: . .:: : :.:. : :: :.:...:: : : ::.:::..::: ..:
CCDS44 GGQYWAVTSPERSPLSC-GHLSRVRVALDLEVGAVSFYAVED-MRHLYTFRVNFQERVFP
240 250 260 270 280
430 440
pF1KA0 ALRLWEGAISIPRLP
CCDS44 LFSVCSTGTYLRIWP
290 300
>>CCDS43414.1 TRIM7 gene_id:81786|Hs108|chr5 (329 aa)
initn: 283 init1: 155 opt: 330 Z-score: 329.9 bits: 69.8 E(32554): 4.7e-12
Smith-Waterman score: 344; 30.2% identity (54.0% similar) in 348 aa overlap (86-427:12-314)
60 70 80 90 100 110
pF1KA0 HPVGLALEAAVHVQKLSQECLKQLAIKKQQHIDNITQIEDATEKLKANAESSKTWLKGKF
:.. :. .: : ::. : . ..:
CCDS43 MTQATGQMLCLHVQVPLQLLLLGQKQMA-AEQEK--VGAEF
10 20 30
120 130 140 150 160 170
pF1KA0 TELRLLLDEEEALAKKFIDKNTQLTLQVYREQADSCREQLDI----MNDLSNRVWSISQE
:: .: :.:. ... . .:. .: ..: .. :: . .. ::... .:.
CCDS43 QALRAFLVEQEG---RLLGRLEELSREVAQKQNENL-AQLGVEITQLSKLSSQIQETAQK
40 50 60 70 80 90
180 190 200 210 220 230
pF1KA0 PDPVQRLQAYTATEQEMQQQMSLGELCHPVPLSFEPVKSFFKGLVEAVESTLQTPL-DIR
:: .. :: . .: .. : :: . .:. .: : ... . ..
CCDS43 PD-LDFLQEFKSTLSR----------CSNVP-GPKPT---------TVSSEMKNKVWNVS
100 110 120 130
240 250 260 270 280
pF1KA0 LKESINCQLSDPSSTKPGTLLKTSPSPERSLLLKYARTP-TLDPDTMHARLRLSADRLTV
:: . : .:: :. : : .. :::::: . :: :: : :
CCDS43 LKTFV----------LKG-MLKKFKEDLRGELEKEEKVELTLDPDTANPRLILSLDLKGV
140 150 160 170 180
290 300 310 320 330 340
pF1KA0 RCGLLGSLGPVPVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLRRRGA
: : .. : :::. .::: :..:::.:::.: . :: :.: :.::.:
CCDS43 RLGERAQDLPNHPCRFDTNTRVLASCGFSSGRHHWEVEVG-SKDGWAFGVARESVRRKGL
190 200 210 220 230 240
350 360 370 380 390 400
pF1KA0 SAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAGVLAFYDVTG
. . .. : :. .::: . .:: : :.:. : :: :.:...:: :
CCDS43 TP---FTPEEGVWALQLNGGQYWAVTSPERSPLSC-GHLSRVRVALDLEVGAVSFYAVED
250 260 270 280 290
410 420 430 440
pF1KA0 GMSHLHTFRATFQEPLYPALRLWEGAISIPRLP
: ::.:::..::: ..:
CCDS43 -MRHLYTFRVNFQERVFPLFSVCSTGTYLRIWP
300 310 320
>>CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 (511 aa)
initn: 309 init1: 155 opt: 330 Z-score: 327.3 bits: 69.9 E(32554): 6.6e-12
Smith-Waterman score: 432; 30.1% identity (54.2% similar) in 415 aa overlap (23-427:129-496)
10 20 30 40 50
pF1KA0 MAGAATGSRTPGRSELVEGCGWRCPEHGDRVAELFCRRCRRCVCALCPVLGA
:: .::. .:.:. : .:..:
CCDS44 VATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPF-KLYCQDDGRAICVVCDRARE
100 110 120 130 140 150
60 70 80 90 100
pF1KA0 HRGHPVGLALEAAVHVQKLSQECLKQLAIKKQQHID----NITQIEDATEKLKANAESSK
:: : : : :. ::. : : ..: . :.. : :. ... : :: : . .
CCDS44 HREHAV-LPLDEAVQEAKELLE--SRLRVLKKELEDCEVFRSTEKKESKELLKQMA-AEQ
160 170 180 190 200 210
110 120 130 140 150 160
pF1KA0 TWLKGKFTELRLLLDEEEALAKKFIDKNTQLTLQVYREQADSCREQLDI----MNDLSNR
. ..: :: .: :.:. ... . .:. .: ..: .. :: . .. ::..
CCDS44 EKVGAEFQALRAFLVEQEG---RLLGRLEELSREVAQKQNENL-AQLGVEITQLSKLSSQ
220 230 240 250 260
170 180 190 200 210 220
pF1KA0 VWSISQEPDPVQRLQAYTATEQEMQQQMSLGELCHPVPLSFEPVKSFFKGLVEAVESTLQ
. .:.:: .. :: . .: .. : :: . .:. .: : ..
CCDS44 IQETAQKPD-LDFLQEFKSTLSR----------CSNVP-GPKPT---------TVSSEMK
270 280 290 300
230 240 250 260 270 280
pF1KA0 TPL-DIRLKESINCQLSDPSSTKPGTLLKTSPSPERSLLLKYARTP-TLDPDTMHARLRL
. . .. :: . :. .:: :. : : .. :::::: . :: :
CCDS44 NKVWNVSLKTFV---LKG--------MLKKFKEDLRGELEKEEKVELTLDPDTANPRLIL
310 320 330 340 350
290 300 310 320 330 340
pF1KA0 SADRLTVRCGLLGSLGPVPVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYA
: : :: : .. : :::. .::: :..:::.:::.: . :: :.:
CCDS44 SLDLKGVRLGERAQDLPNHPCRFDTNTRVLASCGFSSGRHHWEVEVG-SKDGWAFGVARE
360 370 380 390 400 410
350 360 370 380 390 400
pF1KA0 SLRRRGASAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAGVL
:.::.: . . .. : :. .::: . .:: : :.:. : :: :.:..
CCDS44 SVRRKGLTP---FTPEEGVWALQLNGGQYWAVTSPERSPLSC-GHLSRVRVALDLEVGAV
420 430 440 450 460 470
410 420 430 440
pF1KA0 AFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRLP
.:: : : ::.:::..::: ..:
CCDS44 SFYAVED-MRHLYTFRVNFQERVFPLFSVCSTGTYLRIWP
480 490 500 510
>>CCDS11591.1 TRIM25 gene_id:7706|Hs108|chr17 (630 aa)
initn: 275 init1: 107 opt: 325 Z-score: 321.1 bits: 69.1 E(32554): 1.4e-11
Smith-Waterman score: 370; 25.3% identity (52.2% similar) in 475 aa overlap (29-432:161-616)
10 20 30 40 50
pF1KA0 MAGAATGSRTPGRSELVEGCGWRCPEHGDRVAELFCRRCRRCVCALCPVLGAHRG-HP
.:. :.:: . .:.: .: : :. :
CCDS11 LQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICLV--EHKTCSP
140 150 160 170 180
60 70 80 90 100 110
pF1KA0 VGLALEAAVHVQKLSQECLKQLAIKKQQHIDNITQIEDATEKLKANAESSKTWLKGKFTE
..:. .:.. .. .. : . . . . .... . .. .:. . :. ..::
CCDS11 ASLS-QASADLEATLRHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQLQQEYTE
190 200 210 220 230 240
120 130 140 150
pF1KA0 LRLLLD------------EEEALAKKF-------IDKNTQL-TLQVYREQADSCREQLDI
.. ::: ::. . .:: . :.... ::. ::. . :.....
CCDS11 MKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLTKRDEFEF
250 260 270 280 290 300
160 170 180 190 200
pF1KA0 MNDLSNRVWSISQEPDPVQRL-----------QAYTATEQEMQQQMSLGELCHPVPLSFE
.. : .. .:: .: . .. :. ..:..: .:.: .:.: : .
CCDS11 LEKAS-KLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQ--CIGRLQEPTPSSGD
310 320 330 340 350 360
210 220 230
pF1KA0 P--------------VKSFFKGL--------VEAVESTLQT---P---LDIR---LKESI
: ::. : : :. : : : : .:.. :. .
CCDS11 PGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGLEAAA
370 380 390 400 410 420
240 250 260 270 280 290
pF1KA0 NCQLSDPSSTK-PGTLLKTSPSPERSLLLKYARTPTLDPDTMHARLRLSADRLTVRCGLL
. : :.::. . .:.: . : ::.: :: .: : .. :: .: .
CCDS11 KATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALS------ECYTV
430 440 450 460 470
300 310 320 330 340
pF1KA0 GSLGPVPV------LRFDALWQVLARDCFATGRHYWEVDVQEAG-AGWWVGAAYASLRRR
.:.. .: :: :::. :. : :::::..:. . : :: :.:. :.
CCDS11 ASVAEMPQNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCG--VGICYGSMNRQ
480 490 500 510 520 530
350 360 370 380 390 400
pF1KA0 GASAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAGVLAFYDV
: .::: : :::.. .. . :.:.. .. : : :.::.:. . : . :. :
CCDS11 GPE--SRLGRNSASWCVEWFNTKISAWHNNVEKTL-PSTKATRVGVLLNCDHGFVIFFAV
540 550 560 570 580 590
410 420 430 440
pF1KA0 TGGMSHLHTFRATFQEPLYPALRLWEGAISIPRLP
. . .. ::. : : :::: .:
CCDS11 ADKVHLMYKFRVDFTEALYPA--FWVFSAGATLSICSPK
600 610 620 630
>>CCDS56405.1 BTN2A1 gene_id:11120|Hs108|chr6 (466 aa)
initn: 281 init1: 115 opt: 323 Z-score: 321.0 bits: 68.6 E(32554): 1.5e-11
Smith-Waterman score: 323; 39.3% identity (63.5% similar) in 178 aa overlap (259-431:261-429)
230 240 250 260 270 280
pF1KA0 IRLKESINCQLSDPSSTKPGTLLKTSPSPERSLLLKYARTPTLDPDTMHARLRLSADRLT
:..: .: .::::: : : :: :: .
CCDS56 IALKELEKERVQKEEELQVKEKLQEELRWRRTFL--HAVDVVLDPDTAHPDLFLSEDRRS
240 250 260 270 280
290 300 310 320 330 340
pF1KA0 VR-CGL--LGSLGPVPVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLR
:: : . :: : :::. ::.:. ::.:.:::::.:... : ::. :..
CCDS56 VRRCPFRHLGESVPDNPERFDSQPCVLGRESFASGKHYWEVEVENV-IEWTVGVCRDSVE
290 300 310 320 330 340
350 360 370 380 390 400
pF1KA0 RRGASAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRP-RDDLDRLGVFLDYEAGVLAF
:.: . : . : :. . .: : .. .:. : ...: :.::::::::: ..:
CCDS56 RKGE---VLLIPQNGFWTLEMHKGQYRAV--SSPDRILPLKESLCRVGVFLDYEAGDVSF
350 360 370 380 390 400
410 420 430 440
pF1KA0 YDVTGGMSHLHTF-RATFQEPLYPALRLWEGAISIPRLP
:.. ::..: :..:. :. : .::
CCDS56 YNMRD-RSHIYTCPRSAFSVPVRPFFRLGCEDSPIFICPALTGANGVTVPEEGLTLHRVG
410 420 430 440 450 460
>>CCDS56403.1 BTN2A2 gene_id:10385|Hs108|chr6 (313 aa)
initn: 292 init1: 170 opt: 320 Z-score: 320.5 bits: 68.0 E(32554): 1.6e-11
Smith-Waterman score: 320; 38.3% identity (63.4% similar) in 175 aa overlap (259-431:111-276)
230 240 250 260 270 280
pF1KA0 IRLKESINCQLSDPSSTKPGTLLKTSPSPERSLLLKYARTPTLDPDTMHARLRLSADRLT
:..: .: .::::: : .: :: :: .
CCDS56 REKKILSGEKKVEQEEKEIAQQLQEELRWRRTFL--HAADVVLDPDTAHPELFLSEDRRS
90 100 110 120 130
290 300 310 320 330 340
pF1KA0 VRCGLLGSLGPVPVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLRRRG
:: : . : :::. ::. . ::.:.:::::.:... . : ::. :..:.:
CCDS56 VRRGPYRQRVPDNPERFDSQPCVLGWESFASGKHYWEVEVENVMV-WTVGVCRHSVERKG
140 150 160 170 180 190
350 360 370 380 390 400
pF1KA0 ASAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRP-RDDLDRLGVFLDYEAGVLAFYDV
. : . : :. . .: :. . .: . : ...: :.::::::::: ..::..
CCDS56 E---VLLIPQNGFWTLEMFGNQYRALSSPER--ILPLKESLCRVGVFLDYEAGDVSFYNM
200 210 220 230 240 250
410 420 430 440
pF1KA0 TGGMSHLHTF-RATFQEPLYPALRLWEGAISIPRLP
::..: :..: :. : .::
CCDS56 RD-RSHIYTCPRSAFTVPVRPFFRLGSDDSPIFICPALTGASGVMVPEEGLKLHRVGTHQ
260 270 280 290 300 310
>>CCDS4613.1 BTN2A1 gene_id:11120|Hs108|chr6 (527 aa)
initn: 281 init1: 115 opt: 323 Z-score: 320.3 bits: 68.7 E(32554): 1.6e-11
Smith-Waterman score: 323; 39.3% identity (63.5% similar) in 178 aa overlap (259-431:322-490)
230 240 250 260 270 280
pF1KA0 IRLKESINCQLSDPSSTKPGTLLKTSPSPERSLLLKYARTPTLDPDTMHARLRLSADRLT
:..: .: .::::: : : :: :: .
CCDS46 IALKELEKERVQKEEELQVKEKLQEELRWRRTFL--HAVDVVLDPDTAHPDLFLSEDRRS
300 310 320 330 340
290 300 310 320 330 340
pF1KA0 VR-CGL--LGSLGPVPVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLR
:: : . :: : :::. ::.:. ::.:.:::::.:... : ::. :..
CCDS46 VRRCPFRHLGESVPDNPERFDSQPCVLGRESFASGKHYWEVEVENV-IEWTVGVCRDSVE
350 360 370 380 390 400
350 360 370 380 390 400
pF1KA0 RRGASAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRP-RDDLDRLGVFLDYEAGVLAF
:.: . : . : :. . .: : .. .:. : ...: :.::::::::: ..:
CCDS46 RKGE---VLLIPQNGFWTLEMHKGQYRAV--SSPDRILPLKESLCRVGVFLDYEAGDVSF
410 420 430 440 450 460
410 420 430 440
pF1KA0 YDVTGGMSHLHTF-RATFQEPLYPALRLWEGAISIPRLP
:.. ::..: :..:. :. : .::
CCDS46 YNMRD-RSHIYTCPRSAFSVPVRPFFRLGCEDSPIFICPALTGANGVTVPEEGLTLHRVG
470 480 490 500 510 520
>>CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 (354 aa)
initn: 293 init1: 113 opt: 320 Z-score: 319.8 bits: 68.0 E(32554): 1.7e-11
Smith-Waterman score: 331; 27.9% identity (52.0% similar) in 358 aa overlap (73-421:19-324)
50 60 70 80 90 100
pF1KA0 VCALCPVLGAHRGHPVGLALEAAVHVQKLSQECLKQLAIKKQQHIDNITQIEDATEKLKA
.. :. : ....: . . .. . :.
CCDS81 MPEKTAVDQPWTQALRELKDQLQALQDSEREHTEALQLLKRQLAETKS
10 20 30 40
110 120 130 140 150 160
pF1KA0 NAESSKTWLKGKFTEL-RLLLDEEEALAKKFIDKNTQLTLQVYREQADSCREQLDIMNDL
...: .: . : .: ::: ....:. ... .::. : ..:.
CCDS81 STKSLRTTIGEAFERLHRLLRERQKAMLEEL--------------EADTART----LTDI
50 60 70 80 90
170 180 190 200 210 220
pF1KA0 SNRVWSISQEPDPVQRLQAYTATEQEMQQQMSLGELCHPVPLSFEPVKSFFKGLVEAVES
..: ::. ::. : .:.. :. ..:. :. .
CCDS81 EQKVQRYSQQLRKVQE------GAQILQER-----------LAETDRHTFLAGV-----A
100 110 120
230 240 250 260 270
pF1KA0 TLQTPLDIRLKESINCQLSD-PSSTKPGTLLKTSPSPERSLLLKYARTP---TLDPDTMH
.:. : ...:. : : :.: : : : .::. .: :::: : :
CCDS81 SLSERLKGKIHET-NLTYEDFPTSKYTGPLQYT---IWKSLFQDIHPVPAALTLDPGTAH
130 140 150 160 170 180
280 290 300 310 320 330
pF1KA0 ARLRLSADRLTVRCGLLGSLGPVPVL----RFDALWQVLARDCFATGRHYWEVDVQEAGA
:: :: : : :.: : :. :::. .::. . :..: ::::: : : .
CCDS81 QRLILSDDCTIVA---YGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEK-T
190 200 210 220 230 240
340 350 360 370 380 390
pF1KA0 GWWVGAAYASLRRRGASAAARLGCNRQSWCLKRYDLEYWAFHDGQRSRLRPRDDLDRLGV
: .: :. . :.:. .. .: .:. .: . .. .:: :: ::..::
CCDS81 QWVIGLAHEAASRKGS---IQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGV
250 260 270 280 290
400 410 420 430 440
pF1KA0 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRLP
::::. :.: ::.. :: :.::: :
CCDS81 FLDYDQGLLIFYNADD-MSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI
300 310 320 330 340 350
442 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:38:14 2016 done: Sat Nov 5 06:38:14 2016
Total Scan time: 3.310 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]