Result of FASTA (ccds) for
pF1KA0121
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0121, 290 aa
1>>>pF1KA0121 290 - 290 aa - 290 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0556+/-0.000671; mu= 8.8748+/- 0.041
mean_var=124.1527+/-24.929, 0's: 0 Z-trim(115.0): 8 B-trim: 66 in 1/49
Lambda= 0.115106
statistics sampled from 15531 (15538) to 15531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.477), width: 16
Scan time: 2.540
The best scores are: opt bits E(32554)
CCDS2606.1 VGLL4 gene_id:9686|Hs108|chr3 ( 290) 1964 336.3 1.6e-92
CCDS68343.1 VGLL4 gene_id:9686|Hs108|chr3 ( 295) 1827 313.5 1.1e-85
CCDS46754.1 VGLL4 gene_id:9686|Hs108|chr3 ( 296) 1826 313.4 1.3e-85
CCDS68342.1 VGLL4 gene_id:9686|Hs108|chr3 ( 231) 1586 273.5 1e-73
CCDS46756.1 VGLL4 gene_id:9686|Hs108|chr3 ( 206) 1397 242.0 2.7e-64
CCDS46755.1 VGLL4 gene_id:9686|Hs108|chr3 ( 210) 1394 241.5 3.8e-64
>>CCDS2606.1 VGLL4 gene_id:9686|Hs108|chr3 (290 aa)
initn: 1964 init1: 1964 opt: 1964 Z-score: 1774.5 bits: 336.3 E(32554): 1.6e-92
Smith-Waterman score: 1964; 99.7% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KA0 METPLDVLSRAASLVHADDEKREAALRGEPRMQTLPVASALSSHRTGPPPISPSKRKFSM
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS26 METPLDVLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH
190 200 210 220 230 240
250 260 270 280 290
pF1KA0 FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
250 260 270 280 290
>>CCDS68343.1 VGLL4 gene_id:9686|Hs108|chr3 (295 aa)
initn: 1826 init1: 1826 opt: 1827 Z-score: 1651.5 bits: 313.5 E(32554): 1.1e-85
Smith-Waterman score: 1827; 97.5% identity (98.5% similar) in 275 aa overlap (16-290:21-295)
10 20 30 40 50
pF1KA0 METPLDVLSRAASLVHADDEKREAALRGEPRMQTLPVASALSSHRTGPPPISPSK
: .. :::::::::.:::::::::::::::::::::::
CCDS68 MTENTHFDKIPESCALKSWRHPGLHHGEAALRGEPRIQTLPVASALSSHRTGPPPISPSK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA0 RKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA0 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
250 260 270 280 290
>>CCDS46754.1 VGLL4 gene_id:9686|Hs108|chr3 (296 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1650.6 bits: 313.4 E(32554): 1.3e-85
Smith-Waterman score: 1826; 99.6% identity (100.0% similar) in 268 aa overlap (23-290:29-296)
10 20 30 40 50
pF1KA0 METPLDVLSRAASLVHADDEKREAALRGEPRMQTLPVASALSSHRTGPPPISPS
:::::::::.::::::::::::::::::::::
CCDS46 MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRIQTLPVASALSSHRTGPPPISPS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA0 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA0 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
250 260 270 280 290
>>CCDS68342.1 VGLL4 gene_id:9686|Hs108|chr3 (231 aa)
initn: 1586 init1: 1586 opt: 1586 Z-score: 1436.7 bits: 273.5 E(32554): 1e-73
Smith-Waterman score: 1586; 100.0% identity (100.0% similar) in 231 aa overlap (60-290:1-231)
30 40 50 60 70 80
pF1KA0 PRMQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTA
::::::::::::::::::::::::::::::
CCDS68 MEPGDEDLDCDNDHVSKMSRIFNPHLNKTA
10 20 30
90 100 110 120 130 140
pF1KA0 NGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLS
40 50 60 70 80 90
150 160 170 180 190 200
pF1KA0 PTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVV
100 110 120 130 140 150
210 220 230 240 250 260
pF1KA0 EEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRR
160 170 180 190 200 210
270 280 290
pF1KA0 GQPASPSAHMVSHSHSPSVVS
:::::::::::::::::::::
CCDS68 GQPASPSAHMVSHSHSPSVVS
220 230
>>CCDS46756.1 VGLL4 gene_id:9686|Hs108|chr3 (206 aa)
initn: 1397 init1: 1397 opt: 1397 Z-score: 1267.8 bits: 242.0 E(32554): 2.7e-64
Smith-Waterman score: 1397; 99.5% identity (100.0% similar) in 206 aa overlap (85-290:1-206)
60 70 80 90 100 110
pF1KA0 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
.:::::::::::::::::::::::::::::
CCDS46 MNKTANGDCRRDPRERSRSPIERAVAPTMS
10 20 30
120 130 140 150 160 170
pF1KA0 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KA0 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
100 110 120 130 140 150
240 250 260 270 280 290
pF1KA0 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
160 170 180 190 200
>>CCDS46755.1 VGLL4 gene_id:9686|Hs108|chr3 (210 aa)
initn: 1394 init1: 1394 opt: 1394 Z-score: 1265.0 bits: 241.5 E(32554): 3.8e-64
Smith-Waterman score: 1394; 100.0% identity (100.0% similar) in 205 aa overlap (86-290:6-210)
60 70 80 90 100 110
pF1KA0 RKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSL
::::::::::::::::::::::::::::::
CCDS46 MIKVRNKTANGDCRRDPRERSRSPIERAVAPTMSL
10 20 30
120 130 140 150 160 170
pF1KA0 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
40 50 60 70 80 90
180 190 200 210 220 230
pF1KA0 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
100 110 120 130 140 150
240 250 260 270 280 290
pF1KA0 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
160 170 180 190 200 210
290 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:09:31 2016 done: Wed Nov 2 18:09:31 2016
Total Scan time: 2.540 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]