FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0110, 274 aa
  1>>>pF1KA0110 274 - 274 aa - 274 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5284+/-0.000745; mu= 14.2740+/- 0.045
 mean_var=75.2960+/-14.590, 0's: 0 Z-trim(110.1): 14  B-trim: 0 in 0/52
 Lambda= 0.147805
 statistics sampled from 11352 (11357) to 11352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.349), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS4904.1 MAD2L1BP gene_id:9587|Hs108|chr6        ( 274) 1860 405.5 2.1e-113
CCDS47431.1 MAD2L1BP gene_id:9587|Hs108|chr6       ( 306) 1776 387.6 5.6e-108


>>CCDS4904.1 MAD2L1BP gene_id:9587|Hs108|chr6             (274 aa)
 initn: 1860 init1: 1860 opt: 1860  Z-score: 2149.5  bits: 405.5 E(32554): 2.1e-113
Smith-Waterman score: 1860; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KA0 MAAPEAEVLSSAAVPDLEWYEKSEETHASQIELLETSSTQEPLNASEAFCPRDCMVPVVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MAAPEAEVLSSAAVPDLEWYEKSEETHASQIELLETSSTQEPLNASEAFCPRDCMVPVVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 PGPVSQEGCCQFTCELLKHIMYQRQQLPLPYEQLKHFYRKPSPQAEEMLKKKPRATTEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 PGPVSQEGCCQFTCELLKHIMYQRQQLPLPYEQLKHFYRKPSPQAEEMLKKKPRATTEVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SRKCQQALAELESVLSHLEDFFARTLVPRVLILLGGNALSPKEFYELDLSLLAPYSVDQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 SRKCQQALAELESVLSHLEDFFARTLVPRVLILLGGNALSPKEFYELDLSLLAPYSVDQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LSTAACLRRLFRAIFMADAFSELQAPPLMGTVVMAQGHRNCGEDWFRPKLNYRVPSRGHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LSTAACLRRLFRAIFMADAFSELQAPPLMGTVVMAQGHRNCGEDWFRPKLNYRVPSRGHK
              190       200       210       220       230       240

              250       260       270    
pF1KA0 LTVTLSCGRPSIRTTAWEDYIWFQAPVTFKGFRE
       ::::::::::::::::::::::::::::::::::
CCDS49 LTVTLSCGRPSIRTTAWEDYIWFQAPVTFKGFRE
              250       260       270    

>>CCDS47431.1 MAD2L1BP gene_id:9587|Hs108|chr6            (306 aa)
 initn: 1776 init1: 1776 opt: 1776  Z-score: 2052.0  bits: 387.6 E(32554): 5.6e-108
Smith-Waterman score: 1776; 98.9% identity (99.2% similar) in 263 aa overlap (12-274:44-306)

                                  10        20        30        40 
pF1KA0                    MAAPEAEVLSSAAVPDLEWYEKSEETHASQIELLETSSTQE
                                     : . ::::::::::::::::::::::::::
CCDS47 PRLEHNGMTSAHHNFRLPGSRDSPASASQVAEIIDLEWYEKSEETHASQIELLETSSTQE
            20        30        40        50        60        70   

              50        60        70        80        90       100 
pF1KA0 PLNASEAFCPRDCMVPVVFPGPVSQEGCCQFTCELLKHIMYQRQQLPLPYEQLKHFYRKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PLNASEAFCPRDCMVPVVFPGPVSQEGCCQFTCELLKHIMYQRQQLPLPYEQLKHFYRKP
            80        90       100       110       120       130   

             110       120       130       140       150       160 
pF1KA0 SPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFARTLVPRVLILLGGNALSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFARTLVPRVLILLGGNALSP
           140       150       160       170       180       190   

             170       180       190       200       210       220 
pF1KA0 KEFYELDLSLLAPYSVDQSLSTAACLRRLFRAIFMADAFSELQAPPLMGTVVMAQGHRNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KEFYELDLSLLAPYSVDQSLSTAACLRRLFRAIFMADAFSELQAPPLMGTVVMAQGHRNC
           200       210       220       230       240       250   

             230       240       250       260       270    
pF1KA0 GEDWFRPKLNYRVPSRGHKLTVTLSCGRPSIRTTAWEDYIWFQAPVTFKGFRE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GEDWFRPKLNYRVPSRGHKLTVTLSCGRPSIRTTAWEDYIWFQAPVTFKGFRE
           260       270       280       290       300      




274 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:07:13 2016 done: Wed Nov  2 18:07:13 2016
 Total Scan time:  1.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]