FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0104, 292 aa
  1>>>pF1KA0104 292 - 292 aa - 292 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1519+/-0.000298; mu= 8.0650+/- 0.019
 mean_var=122.7085+/-24.575, 0's: 0 Z-trim(120.5): 1  B-trim: 0 in 0/55
 Lambda= 0.115781
 statistics sampled from 35876 (35877) to 35876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.421), width:  16
 Scan time:  7.630

The best scores are:                                      opt bits E(85289)
NP_055578 (OMIM: 611832) 39S ribosomal protein L19 ( 292) 2006 345.4 7.6e-95


>>NP_055578 (OMIM: 611832) 39S ribosomal protein L19, mi  (292 aa)
 initn: 2006 init1: 2006 opt: 2006  Z-score: 1823.7  bits: 345.4 E(85289): 7.6e-95
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KA0 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KA0 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS
              250       260       270       280       290  




292 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:27:43 2016 done: Fri Nov  4 00:27:44 2016
 Total Scan time:  7.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]