FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0102, 226 aa
  1>>>pF1KA0102 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9974+/-0.000874; mu= 11.9107+/- 0.053
 mean_var=103.4202+/-20.799, 0's: 0 Z-trim(109.8): 13  B-trim: 0 in 0/51
 Lambda= 0.126116
 statistics sampled from 11148 (11152) to 11148 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS44681.1 SPCS2 gene_id:9789|Hs108|chr11         ( 226) 1511 284.9 2.9e-77


>>CCDS44681.1 SPCS2 gene_id:9789|Hs108|chr11              (226 aa)
 initn: 1511 init1: 1511 opt: 1511  Z-score: 1500.5  bits: 284.9 E(32554): 2.9e-77
Smith-Waterman score: 1511; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KA0 MAAAAVQGGRSGGSGGCSGAGGASNCGTGSGRSGLLDKWKIDDKPVKIDKWDGSAVKNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAAVQGGRSGGSGGCSGAGGASNCGTGSGRSGLLDKWKIDDKPVKIDKWDGSAVKNSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 DDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 YFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGR
              130       140       150       160       170       180

              190       200       210       220      
pF1KA0 TKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK
              190       200       210       220      




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:58:52 2016 done: Wed Nov  2 23:58:52 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]