Result of FASTA (ccds) for
pF1KA0100
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0100, 2235 aa
1>>>pF1KA0100 2235 - 2235 aa - 2235 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2247+/-0.00113; mu= 21.0175+/- 0.067
mean_var=96.5635+/-19.009, 0's: 0 Z-trim(104.9): 32 B-trim: 0 in 0/51
Lambda= 0.130517
statistics sampled from 8106 (8119) to 8106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.249), width: 16
Scan time: 6.800
The best scores are: opt bits E(32554)
CCDS32595.1 KIAA0100 gene_id:9703|Hs108|chr17 (2235) 14970 2830.9 0
>>CCDS32595.1 KIAA0100 gene_id:9703|Hs108|chr17 (2235 aa)
initn: 14970 init1: 14970 opt: 14970 Z-score: 15224.6 bits: 2830.9 E(32554): 0
Smith-Waterman score: 14970; 100.0% identity (100.0% similar) in 2235 aa overlap (1-2235:1-2235)
10 20 30 40 50 60
pF1KA0 MPLFFSALLVLLLVALSALFLGRWLVVRLATKWCQRKLQAELKIGSFRFFWIQNVSLKFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPLFFSALLVLLLVALSALFLGRWLVVRLATKWCQRKLQAELKIGSFRFFWIQNVSLKFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QHQQTVEIDNLWISSKLLSHDLPHYVALCFGEVRIRTDLQKVSDLSAPFSQSAGVDQKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QHQQTVEIDNLWISSKLLSHDLPHYVALCFGEVRIRTDLQKVSDLSAPFSQSAGVDQKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SFSPSLLKIFCQLFSIHVDAINIMVLKVDTSESLWHIQISRSRFLLDSDGKRLICEVSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SFSPSLLKIFCQLFSIHVDAINIMVLKVDTSESLWHIQISRSRFLLDSDGKRLICEVSLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 KINSKVLKSGQLEDTCLVELSLALDLCLKVGISSRHLTAITVDVWTLHAELHEGLFQSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KINSKVLKSGQLEDTCLVELSLALDLCLKVGISSRHLTAITVDVWTLHAELHEGLFQSQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 LCQGPSLASKPVPCSEVTENLVEPTLPGLFLLQQLPDQVKVKMENTSVVLSMNSQKRHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LCQGPSLASKPVPCSEVTENLVEPTLPGLFLLQQLPDQVKVKMENTSVVLSMNSQKRHLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 WTLKLLQFLYHRDEDQLPLRSFTANSDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WTLKLLQFLYHRDEDQLPLRSFTANSDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKASV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 QVTTIDLSASLVLNTCIIHYRHQEFSHWLHLLALETQGSSSPVLKQRKKRTFPQILAPII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QVTTIDLSASLVLNTCIIHYRHQEFSHWLHLLALETQGSSSPVLKQRKKRTFPQILAPII
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 FSTSISNVNISIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSTSISNVNISIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 QRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEASDTCAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEASDTCAQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 CLSRILSLMGPQSGKSAVSRHSSFGESVSLLWKVDLKVEDMNLFTLSALVGASEVRLDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLSRILSLMGPQSGKSAVSRHSSFGESVSLLWKVDLKVEDMNLFTLSALVGASEVRLDTL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 TILGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLSLSMLSITYHSSIRSLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TILGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLSLSMLSITYHSSIRSLEV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 QCGAGLTLLWSPPDHMYLYQHVLATLQCRDLLRATVFPETVPSLALETSGTTSELEGRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QCGAGLTLLWSPPDHMYLYQHVLATLQCRDLLRATVFPETVPSLALETSGTTSELEGRAP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 EPLPPKRLLNLTLEVSTAKLTAFVAEDKFITLAAESVSLSRHGGSLQAYCPELAAGFDGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EPLPPKRLLNLTLEVSTAKLTAFVAEDKFITLAAESVSLSRHGGSLQAYCPELAAGFDGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SIFNFKEVEVQLLPELEEMILHRNPFPALQTLRNRVWLLSFGSVSVEFPYQYDFSRTLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SIFNFKEVEVQLLPELEEMILHRNPFPALQTLRNRVWLLSFGSVSVEFPYQYDFSRTLDE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 AVGVQKWLKGLHQGTRAWASPSPVPLPPDLLLKVEHFSWVFLDDVFEVKLHDNYELMKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVGVQKWLKGLHQGTRAWASPSPVPLPPDLLLKVEHFSWVFLDDVFEVKLHDNYELMKDE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 SKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLERKNIEIYIQRSRRLYGNTPMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLERKNIEIYIQRSRRLYGNTPMR
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 RALLTWSLAGLELVALADASFHGPEHVVEQVQELDPGSPFPPEGLDLVIQWCRMLKCNVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RALLTWSLAGLELVALADASFHGPEHVVEQVQELDPGSPFPPEGLDLVIQWCRMLKCNVK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 SFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILHLGLPWGNVAVERNMPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILHLGLPWGNVAVERNMPPL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 KFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDW
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 HMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFKGDLDINVRTASKYDDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFKGDLDINVRTASKYDDCC
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 FLHLPDLCMTLDLQWLCHGNPHDHHSVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FLHLPDLCMTLDLQWLCHGNPHDHHSVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIK
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 MDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 QLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVT
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 QMVSDLSQVTVHLMASPTEENADHCLDPLVTKTHLLSLSSLTYQRHSNRTAEEELSARDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QMVSDLSQVTVHLMASPTEENADHCLDPLVTKTHLLSLSSLTYQRHSNRTAEEELSARDG
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 DPTFHTHQLHLVDLRISWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DPTFHTHQLHLVDLRISWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMPAK
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 KPKRGVPTSASAPPRVNTPSFSGQPDKGSSGGAYMLQKLIEETDRFVVFTEEESGMSDQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KPKRGVPTSASAPPRVNTPSFSGQPDKGSSGGAYMLQKLIEETDRFVVFTEEESGMSDQL
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 CGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLK
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 QKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESGQAVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESGQAVGG
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 MVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVLENQEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVLENQEKE
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 DLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQ
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 LEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNQKLQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNQKLQL
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 QLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRL
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KA0 TEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQ
1930 1940 1950 1960 1970 1980
1990 2000 2010 2020 2030 2040
pF1KA0 SGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRMMGFFFPGRSVEDDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRMMGFFFPGRSVEDDEV
1990 2000 2010 2020 2030 2040
2050 2060 2070 2080 2090 2100
pF1KA0 GDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGPGKGVAQGLTRSSGVRRSFRKSPEHPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGPGKGVAQGLTRSSGVRRSFRKSPEHPVD
2050 2060 2070 2080 2090 2100
2110 2120 2130 2140 2150 2160
pF1KA0 DIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDF
2110 2120 2130 2140 2150 2160
2170 2180 2190 2200 2210 2220
pF1KA0 AMAVKRDSRKALVAQVIKEKLRLKSATGSEVRGKLETKSDLNMQQQEEEEKARLLIGLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AMAVKRDSRKALVAQVIKEKLRLKSATGSEVRGKLETKSDLNMQQQEEEEKARLLIGLSV
2170 2180 2190 2200 2210 2220
2230
pF1KA0 GDKNPGKKSIFGRRK
:::::::::::::::
CCDS32 GDKNPGKKSIFGRRK
2230
2235 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:04:03 2016 done: Wed Nov 2 18:04:04 2016
Total Scan time: 6.800 Total Display time: 0.260
Function used was FASTA [36.3.4 Apr, 2011]