Result of FASTA (ccds) for
pF1KA0090
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0090, 992 aa
1>>>pF1KA0090 992 - 992 aa - 992 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2183+/-0.00112; mu= 16.2210+/- 0.067
mean_var=66.7938+/-13.323, 0's: 0 Z-trim(102.1): 28 B-trim: 0 in 0/47
Lambda= 0.156930
statistics sampled from 6801 (6806) to 6801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.209), width: 16
Scan time: 3.410
The best scores are: opt bits E(32554)
CCDS59191.1 EMC1 gene_id:23065|Hs108|chr1 ( 992) 6507 1482.8 0
CCDS190.1 EMC1 gene_id:23065|Hs108|chr1 ( 993) 6495 1480.1 0
CCDS59190.1 EMC1 gene_id:23065|Hs108|chr1 ( 971) 5854 1335.0 0
>>CCDS59191.1 EMC1 gene_id:23065|Hs108|chr1 (992 aa)
initn: 6507 init1: 6507 opt: 6507 Z-score: 7951.7 bits: 1482.8 E(32554): 0
Smith-Waterman score: 6507; 100.0% identity (100.0% similar) in 992 aa overlap (1-992:1-992)
10 20 30 40 50 60
pF1KA0 MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 NVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 ITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 ALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVKSSSSEDGSMGSFSEKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVKSSSSEDGSMGSFSEKSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 SKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYRA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 LVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 YVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVHS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 QGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKGP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 VHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 SSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPD
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 VQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYD
910 920 930 940 950 960
970 980 990
pF1KA0 YVLISSVLFGLVFATMITKRLAQVKLLNRAWR
::::::::::::::::::::::::::::::::
CCDS59 YVLISSVLFGLVFATMITKRLAQVKLLNRAWR
970 980 990
>>CCDS190.1 EMC1 gene_id:23065|Hs108|chr1 (993 aa)
initn: 4231 init1: 4231 opt: 6495 Z-score: 7937.0 bits: 1480.1 E(32554): 0
Smith-Waterman score: 6495; 99.9% identity (99.9% similar) in 993 aa overlap (1-992:1-993)
10 20 30 40 50 60
pF1KA0 MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 NVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 ITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHY
250 260 270 280 290 300
310 320 330 340 350
pF1KA0 ALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEV-KSSSSEDGSMGSFSEKS
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS19 ALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKSSSSEDGSMGSFSEKS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 SSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYR
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 ALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 LGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVT
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 ASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSS
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 LYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLR
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 QLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 QLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVH
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA0 SQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKG
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA0 PVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIF
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA0 PSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSP
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA0 DVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 DVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDY
910 920 930 940 950 960
960 970 980 990
pF1KA0 DYVLISSVLFGLVFATMITKRLAQVKLLNRAWR
:::::::::::::::::::::::::::::::::
CCDS19 DYVLISSVLFGLVFATMITKRLAQVKLLNRAWR
970 980 990
>>CCDS59190.1 EMC1 gene_id:23065|Hs108|chr1 (971 aa)
initn: 4700 init1: 4231 opt: 5854 Z-score: 7152.9 bits: 1335.0 E(32554): 0
Smith-Waterman score: 6279; 97.6% identity (97.6% similar) in 993 aa overlap (1-992:1-971)
10 20 30 40 50 60
pF1KA0 MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 NVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWE
::::::::::::: ::::::::::::::::::::::::
CCDS59 NVIAALNSRTGEIY----------------------VITVSNGGRIMRSWETNIGGLNWE
70 80 90
130 140 150 160 170 180
pF1KA0 ITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA0 YGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA0 SSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHY
220 230 240 250 260 270
310 320 330 340 350
pF1KA0 ALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEV-KSSSSEDGSMGSFSEKS
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS59 ALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKSSSSEDGSMGSFSEKS
280 290 300 310 320 330
360 370 380 390 400 410
pF1KA0 SSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYR
340 350 360 370 380 390
420 430 440 450 460 470
pF1KA0 ALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGL
400 410 420 430 440 450
480 490 500 510 520 530
pF1KA0 LGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVT
460 470 480 490 500 510
540 550 560 570 580 590
pF1KA0 ASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSS
520 530 540 550 560 570
600 610 620 630 640 650
pF1KA0 LYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLR
580 590 600 610 620 630
660 670 680 690 700 710
pF1KA0 QLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVH
640 650 660 670 680 690
720 730 740 750 760 770
pF1KA0 SQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKG
700 710 720 730 740 750
780 790 800 810 820 830
pF1KA0 PVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIF
760 770 780 790 800 810
840 850 860 870 880 890
pF1KA0 PSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSP
820 830 840 850 860 870
900 910 920 930 940 950
pF1KA0 DVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDY
880 890 900 910 920 930
960 970 980 990
pF1KA0 DYVLISSVLFGLVFATMITKRLAQVKLLNRAWR
:::::::::::::::::::::::::::::::::
CCDS59 DYVLISSVLFGLVFATMITKRLAQVKLLNRAWR
940 950 960 970
992 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:00:55 2016 done: Wed Nov 2 18:00:55 2016
Total Scan time: 3.410 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]