FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0082, 835 aa
  1>>>pF1KA0082 835 - 835 aa - 835 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9852+/-0.00106; mu= 16.6699+/- 0.064
 mean_var=70.6291+/-13.676, 0's: 0 Z-trim(103.3): 41  B-trim: 34 in 1/50
 Lambda= 0.152610
 statistics sampled from 7300 (7326) to 7300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.225), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS4835.1 CMTR1 gene_id:23070|Hs108|chr6          ( 835) 5619 1247.0       0
CCDS10898.1 CMTR2 gene_id:55783|Hs108|chr16        ( 770)  320 80.3 1.4e-14


>>CCDS4835.1 CMTR1 gene_id:23070|Hs108|chr6               (835 aa)
 initn: 5619 init1: 5619 opt: 5619  Z-score: 6679.9  bits: 1247.0 E(32554):    0
Smith-Waterman score: 5619; 100.0% identity (100.0% similar) in 835 aa overlap (1-835:1-835)

               10        20        30        40        50        60
pF1KA0 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
              730       740       750       760       770       780

              790       800       810       820       830     
pF1KA0 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
              790       800       810       820       830     

>>CCDS10898.1 CMTR2 gene_id:55783|Hs108|chr16             (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 375.2  bits: 80.3 E(32554): 1.4e-14
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
CCDS10 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
CCDS10 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
CCDS10 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
CCDS10 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
CCDS10 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    




835 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 17:59:39 2016 done: Wed Nov  2 17:59:40 2016
 Total Scan time:  2.960 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]