FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0078, 631 aa
  1>>>pF1KA0078 631 - 631 aa - 631 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5236+/-0.000372; mu= 1.5770+/- 0.023
 mean_var=236.3900+/-46.873, 0's: 0 Z-trim(121.5): 11  B-trim: 0 in 0/54
 Lambda= 0.083418
 statistics sampled from 38082 (38093) to 38082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.447), width:  16
 Scan time: 11.990

The best scores are:                                      opt bits E(85289)
NP_006256 (OMIM: 606462,614701) double-strand-brea ( 631) 4211 519.8 1.1e-146


>>NP_006256 (OMIM: 606462,614701) double-strand-break re  (631 aa)
 initn: 4211 init1: 4211 opt: 4211  Z-score: 2754.2  bits: 519.8 E(85289): 1.1e-146
Smith-Waterman score: 4211; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631)

               10        20        30        40        50        60
pF1KA0 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 IFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 EEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 MMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 ENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 GQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 DEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSF
              550       560       570       580       590       600

              610       620       630 
pF1KA0 LVLKKQQAIELTQEEPYSDIIATPGPRFHII
       :::::::::::::::::::::::::::::::
NP_006 LVLKKQQAIELTQEEPYSDIIATPGPRFHII
              610       620       630 




631 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:26:00 2016 done: Fri Nov  4 00:26:01 2016
 Total Scan time: 11.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]