FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0078, 631 aa
  1>>>pF1KA0078 631 - 631 aa - 631 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9498+/-0.000946; mu= 5.0121+/- 0.058
 mean_var=223.2289+/-44.419, 0's: 0 Z-trim(113.5): 7  B-trim: 112 in 1/52
 Lambda= 0.085842
 statistics sampled from 14135 (14139) to 14135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.434), width:  16
 Scan time:  4.330

The best scores are:                                      opt bits E(32554)
CCDS6321.1 RAD21 gene_id:5885|Hs108|chr8           ( 631) 4211 534.4 1.8e-151
CCDS46568.1 RAD21L1 gene_id:642636|Hs108|chr20     ( 556)  818 114.1   5e-25


>>CCDS6321.1 RAD21 gene_id:5885|Hs108|chr8                (631 aa)
 initn: 4211 init1: 4211 opt: 4211  Z-score: 2833.0  bits: 534.4 E(32554): 1.8e-151
Smith-Waterman score: 4211; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631)

               10        20        30        40        50        60
pF1KA0 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 IFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 EEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 MMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 ENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 GQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 DEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSF
              550       560       570       580       590       600

              610       620       630 
pF1KA0 LVLKKQQAIELTQEEPYSDIIATPGPRFHII
       :::::::::::::::::::::::::::::::
CCDS63 LVLKKQQAIELTQEEPYSDIIATPGPRFHII
              610       620       630 

>>CCDS46568.1 RAD21L1 gene_id:642636|Hs108|chr20          (556 aa)
 initn: 1379 init1: 676 opt: 818  Z-score: 562.8  bits: 114.1 E(32554): 5e-25
Smith-Waterman score: 1436; 43.0% identity (67.1% similar) in 633 aa overlap (1-631:1-556)

               10        20        30        40        50        60
pF1KA0 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL
       :::.: ..:::::::::::::::.:::::::::::::: ..:.:.:::::.:::::::::
CCDS46 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP
       :::::::.::::::::::.:::.:.::.: ::.::::.:: ::.::::::::::::::  
CCDS46 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD
         ... :::...:. :::: ::::.::.  :  :.: ..::.    . ::.:. : : ::
CCDS46 --NMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFGE----ESEILRRHS-FFDD
                130       140       150       160            170   

              190       200       210       220       230       240
pF1KA0 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGG
       ..:...  :. :.: ..: :  .:.   : :..    :.::. . .: . :.:...... 
CCDS46 NILLNS--SGPLIE-HSSGSLTGER--SLFYDS---GDGFGDEGAAGEMIDNLLQDDQNI
             180        190         200          210       220     

              250       260       270       280       290       300
pF1KA0 IFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNE
       ...:     :  . :: .: ..   :        ::. . .    :     ..: :. .:
CCDS46 LLEDMHLNRE--ISLPSEPPNSLAVE--------PDNSECI--CVPENEKMNETILLSTE
         230         240               250         260       270   

              310        320       330       340       350         
pF1KA0 EEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKK
       ::.:.:.::::. . : .  .::.:..: .:::.::.:. ::....: . .:.:::::..
CCDS46 EEGFTLDPIDISDIAEKRKGKKRRLLIDPIKELSSKVIHKQLTSFADTLMVLELAPPTQR
           280       290       300       310       320       330   

     360       370       380       390       400       410         
pF1KA0 LMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKE
       :::::. :::. :.:  :: : . .:  :::.:.   .   ..  ::             
CCDS46 LMMWKKRGGVHTLLSTAAQDLIHAELKMLFTKCF---LSSGFKLGRK-------------
           340       350       360          370                    

     420       430       440       450       460       470         
pF1KA0 FENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRK
            . .:. ...  ......  ...::.  ::  .   .:  :  .       : ...
CCDS46 ----MIQKESVREEVGNQNIVETSMMQEPNYQQE--LSKPQTWKDVIG-------GSQHS
           380       390       400         410              420    

     480       490       500       510        520       530        
pF1KA0 AGQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIP-ELELLPEKEKEKEKEKEDDEE
       . .   . .   :.. .:    : :  ::   . .:.  :.:  :      : :. ..::
CCDS46 SHEDTNKNINSEQDIVEM----VSLAAEESSLMNDLFAQEIEYSPV-----ELESLSNEE
          430       440           450       460            470     

      540       550       560       570       580       590        
pF1KA0 EEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFY
                  . : .::: :  :::. : :   : : .:.::..::::..:::::::::
CCDS46 -----------NIETERWNGRILQMLNRL-RESNKMGMQSFSLMKLCRNSDRKQAAAKFY
                    480       490        500       510       520   

      600       610       620       630 
pF1KA0 SFLVLKKQQAIELTQEEPYSDIIATPGPRFHII
       :::::::: ::::.:  ::.::::: :: :. :
CCDS46 SFLVLKKQLAIELSQSAPYADIIATMGPMFYNI
           530       540       550      




631 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:25:59 2016 done: Fri Nov  4 00:25:59 2016
 Total Scan time:  4.330 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]