FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0072, 504 aa
  1>>>pF1KA0072 504 - 504 aa - 504 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9963+/-0.00113; mu= 14.0102+/- 0.068
 mean_var=65.6349+/-13.306, 0's: 0 Z-trim(102.1): 27  B-trim: 350 in 1/47
 Lambda= 0.158309
 statistics sampled from 6783 (6788) to 6783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.209), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS6824.1 PSMD5 gene_id:5711|Hs108|chr9           ( 504) 3208 742.0 3.6e-214
CCDS59143.1 PSMD5 gene_id:5711|Hs108|chr9          ( 461) 2080 484.4 1.2e-136


>>CCDS6824.1 PSMD5 gene_id:5711|Hs108|chr9                (504 aa)
 initn: 3208 init1: 3208 opt: 3208  Z-score: 3958.6  bits: 742.0 E(32554): 3.6e-214
Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KA0 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR
              430       440       450       460       470       480

              490       500    
pF1KA0 LRTYLSEGPYYVKPVSTTAVEGAE
       ::::::::::::::::::::::::
CCDS68 LRTYLSEGPYYVKPVSTTAVEGAE
              490       500    

>>CCDS59143.1 PSMD5 gene_id:5711|Hs108|chr9               (461 aa)
 initn: 2089 init1: 2062 opt: 2080  Z-score: 2566.9  bits: 484.4 E(32554): 1.2e-136
Smith-Waterman score: 2856; 91.5% identity (91.5% similar) in 504 aa overlap (1-504:1-461)

               10        20        30        40        50        60
pF1KA0 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI
       ::::::::::::::::::::::::                                    
CCDS59 LNNAELLKQIVYCIGGENLSVAKA------------------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KA0 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 -------LIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG
                 150       160       170       180       190       

              250       260       270       280       290       300
pF1KA0 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV
       200       210       220       230       240       250       

              310       320       330       340       350       360
pF1KA0 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR
       260       270       280       290       300       310       

              370       380       390       400       410       420
pF1KA0 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA
       320       330       340       350       360       370       

              430       440       450       460       470       480
pF1KA0 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR
       380       390       400       410       420       430       

              490       500    
pF1KA0 LRTYLSEGPYYVKPVSTTAVEGAE
       ::::::::::::::::::::::::
CCDS59 LRTYLSEGPYYVKPVSTTAVEGAE
       440       450       460 




504 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:25:18 2016 done: Fri Nov  4 00:25:18 2016
 Total Scan time:  2.660 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]