Result of FASTA (ccds) for
pF1KA0066
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0066, 981 aa
1>>>pF1KA0066 981 - 981 aa - 981 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8801+/-0.000839; mu= 18.8476+/- 0.051
mean_var=79.8269+/-15.559, 0's: 0 Z-trim(107.2): 14 B-trim: 0 in 0/52
Lambda= 0.143549
statistics sampled from 9445 (9448) to 9445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.29), width: 16
Scan time: 3.640
The best scores are: opt bits E(32554)
CCDS33294.1 RAB3GAP1 gene_id:22930|Hs108|chr2 ( 981) 6624 1382.0 0
CCDS54402.1 RAB3GAP1 gene_id:22930|Hs108|chr2 ( 988) 6600 1377.0 0
>>CCDS33294.1 RAB3GAP1 gene_id:22930|Hs108|chr2 (981 aa)
initn: 6624 init1: 6624 opt: 6624 Z-score: 7407.1 bits: 1382.0 E(32554): 0
Smith-Waterman score: 6624; 100.0% identity (100.0% similar) in 981 aa overlap (1-981:1-981)
10 20 30 40 50 60
pF1KA0 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 AQRAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSKALPQRMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AQRAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSKALPQRMY
910 920 930 940 950 960
970 980
pF1KA0 SVLTKEDFRLAGAFSSDTSFF
:::::::::::::::::::::
CCDS33 SVLTKEDFRLAGAFSSDTSFF
970 980
>>CCDS54402.1 RAB3GAP1 gene_id:22930|Hs108|chr2 (988 aa)
initn: 6104 init1: 6104 opt: 6600 Z-score: 7380.2 bits: 1377.0 E(32554): 0
Smith-Waterman score: 6600; 99.3% identity (99.3% similar) in 988 aa overlap (1-981:1-988)
10 20 30 40 50 60
pF1KA0 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
850 860 870 880 890 900
910 920 930 940 950
pF1KA0 AQR-------AAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSK
::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AQRLTESSDEAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSK
910 920 930 940 950 960
960 970 980
pF1KA0 ALPQRMYSVLTKEDFRLAGAFSSDTSFF
::::::::::::::::::::::::::::
CCDS54 ALPQRMYSVLTKEDFRLAGAFSSDTSFF
970 980
981 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:06:56 2016 done: Thu Nov 3 09:06:56 2016
Total Scan time: 3.640 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]