Result of FASTA (ccds) for
pF1KA0058
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0058, 168 aa
1>>>pF1KA0058 168 - 168 aa - 168 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4443+/-0.000774; mu= 0.8272+/- 0.047
mean_var=225.8140+/-46.751, 0's: 0 Z-trim(117.5): 14 B-trim: 471 in 1/51
Lambda= 0.085349
statistics sampled from 18257 (18270) to 18257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.561), width: 16
Scan time: 2.080
The best scores are: opt bits E(32554)
CCDS8809.1 DAZAP2 gene_id:9802|Hs108|chr12 ( 168) 1193 157.9 2.7e-39
CCDS44884.1 DAZAP2 gene_id:9802|Hs108|chr12 ( 153) 883 119.7 7.7e-28
CCDS44885.1 DAZAP2 gene_id:9802|Hs108|chr12 ( 207) 723 100.1 8.2e-22
CCDS44887.1 DAZAP2 gene_id:9802|Hs108|chr12 ( 136) 668 93.2 6.6e-20
CCDS44886.1 DAZAP2 gene_id:9802|Hs108|chr12 ( 146) 635 89.2 1.2e-18
>>CCDS8809.1 DAZAP2 gene_id:9802|Hs108|chr12 (168 aa)
initn: 1193 init1: 1193 opt: 1193 Z-score: 819.1 bits: 157.9 E(32554): 2.7e-39
Smith-Waterman score: 1193; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)
10 20 30 40 50 60
pF1KA0 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
70 80 90 100 110 120
130 140 150 160
pF1KA0 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
130 140 150 160
>>CCDS44884.1 DAZAP2 gene_id:9802|Hs108|chr12 (153 aa)
initn: 883 init1: 883 opt: 883 Z-score: 613.3 bits: 119.7 E(32554): 7.7e-28
Smith-Waterman score: 883; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KA0 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
70 80 90 100 110 120
130 140 150 160
pF1KA0 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
::::::
CCDS44 TAGNIPVKEDQDHDREQGEEDNGDNNLERRGKM
130 140 150
>>CCDS44885.1 DAZAP2 gene_id:9802|Hs108|chr12 (207 aa)
initn: 723 init1: 723 opt: 723 Z-score: 505.1 bits: 100.1 E(32554): 8.2e-22
Smith-Waterman score: 723; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KA0 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
::::::::::::::::::::::::::::::::::::::::.::
CCDS44 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPASTSWMPSQCCSACSHAGSQ
70 80 90 100 110 120
130 140 150 160
pF1KA0 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
CCDS44 RPRNSAEGELLHGWFRWWLHHLVRNQGHLCAGKDITYLQHFSQCNCFSHINLKLQFRHML
130 140 150 160 170 180
>>CCDS44887.1 DAZAP2 gene_id:9802|Hs108|chr12 (136 aa)
initn: 653 init1: 653 opt: 668 Z-score: 470.9 bits: 93.2 E(32554): 6.6e-20
Smith-Waterman score: 903; 81.0% identity (81.0% similar) in 168 aa overlap (1-168:1-136)
10 20 30 40 50 60
pF1KA0 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSE----------------
10 20 30 40
70 80 90 100 110 120
pF1KA0 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ----------------SVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
50 60 70 80
130 140 150 160
pF1KA0 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
90 100 110 120 130
>>CCDS44886.1 DAZAP2 gene_id:9802|Hs108|chr12 (146 aa)
initn: 636 init1: 596 opt: 635 Z-score: 448.5 bits: 89.2 E(32554): 1.2e-18
Smith-Waterman score: 995; 86.9% identity (86.9% similar) in 168 aa overlap (1-168:1-146)
10 20 30 40 50 60
pF1KA0 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
:::: ::::::::::::::::::::::::::::::::::
CCDS44 MSAA----------------------IPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
70 80 90
130 140 150 160
pF1KA0 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
100 110 120 130 140
168 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:28:32 2016 done: Thu Nov 3 19:28:33 2016
Total Scan time: 2.080 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]