FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0018, 516 aa
  1>>>pF1KA0018 516 - 516 aa - 516 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0080+/-0.000428; mu= 20.1441+/- 0.027
 mean_var=66.1111+/-12.964, 0's: 0 Z-trim(110.0): 41  B-trim: 0 in 0/55
 Lambda= 0.157738
 statistics sampled from 18311 (18321) to 18311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.215), width:  16
 Scan time:  7.220

The best scores are:                                      opt bits E(85289)
NP_055577 (OMIM: 602398,606418) delta(24)-sterol r ( 516) 3555 818.4       0


>>NP_055577 (OMIM: 602398,606418) delta(24)-sterol reduc  (516 aa)
 initn: 3555 init1: 3555 opt: 3555  Z-score: 4371.0  bits: 818.4 E(85289):    0
Smith-Waterman score: 3555; 100.0% identity (100.0% similar) in 516 aa overlap (1-516:1-516)

               10        20        30        40        50        60
pF1KA0 MEPAVSLAVCALLFLLWVRLKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MEPAVSLAVCALLFLLWVRLKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 SSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 ILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 KPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 PKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPSQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 PGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREE
              430       440       450       460       470       480

              490       500       510      
pF1KA0 FWEMFDGSLYHKLREKLGCQDAFPEVYDKICKAARH
       ::::::::::::::::::::::::::::::::::::
NP_055 FWEMFDGSLYHKLREKLGCQDAFPEVYDKICKAARH
              490       500       510      




516 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 17:54:42 2016 done: Wed Nov  2 17:54:43 2016
 Total Scan time:  7.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]