FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0018, 516 aa
  1>>>pF1KA0018 516 - 516 aa - 516 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2785+/-0.00101; mu= 18.2502+/- 0.060
 mean_var=59.6565+/-11.740, 0's: 0 Z-trim(103.2): 30  B-trim: 0 in 0/50
 Lambda= 0.166052
 statistics sampled from 7291 (7298) to 7291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS600.1 DHCR24 gene_id:1718|Hs108|chr1           ( 516) 3555 860.4       0


>>CCDS600.1 DHCR24 gene_id:1718|Hs108|chr1                (516 aa)
 initn: 3555 init1: 3555 opt: 3555  Z-score: 4598.0  bits: 860.4 E(32554):    0
Smith-Waterman score: 3555; 100.0% identity (100.0% similar) in 516 aa overlap (1-516:1-516)

               10        20        30        40        50        60
pF1KA0 MEPAVSLAVCALLFLLWVRLKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MEPAVSLAVCALLFLLWVRLKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 SSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 ILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 KPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 PKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPSQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 PGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREE
              430       440       450       460       470       480

              490       500       510      
pF1KA0 FWEMFDGSLYHKLREKLGCQDAFPEVYDKICKAARH
       ::::::::::::::::::::::::::::::::::::
CCDS60 FWEMFDGSLYHKLREKLGCQDAFPEVYDKICKAARH
              490       500       510      




516 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 17:54:42 2016 done: Wed Nov  2 17:54:42 2016
 Total Scan time:  2.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]