hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090424/iprscan-20090424-16454562/chunk_1/iprscan-20090424-16454562.nocrc
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Query sequence: pF1KB7668
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00132                                                 149.9    2.7e-40   2
SM00389                                                  90.6    1.9e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00132    1/2       4    55 ..     1    52 []    73.7  2.4e-17
SM00132    2/2      63   118 ..     1    52 []    76.2    4e-18
SM00389    1/1     180   242 ..     1    63 []    90.6  1.9e-22

Alignments of top-scoring domains:
SM00132: domain 1 of 2, from 4 to 55: score 73.7, E = 2.4e-17
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLggtffekdgkl
                      +CagC +pI +++ l++l+++wH +C +C++Ck++L++++f+++gkl
   pF1KB7668     4    HCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKL 50   

                   yCkdc<-*
                   yCk++   
   pF1KB7668    51 YCKND    55   

SM00132: domain 2 of 2, from 63 to 118: score 76.2, E = 4e-18
                   *->kCagCgkpItg.devlralgkvwHpeCFkCskCkkpLgg...tffek
                      kCagC ++I+++d v++a+ kv+H +CF+C +C+k+L+++++ ++ +
   pF1KB7668    63    KCAGCAQGISPsDLVRKARSKVFHLNCFTCMVCNKQLSTgeeLYVID 109  

                   dgklyCkdc<-*
                   ++k+ Ckd+   
   pF1KB7668   110 ENKFVCKDD    118  

SM00389: domain 1 of 1, from 180 to 242: score 90.6, E = 1.9e-22
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +r +Rt++   Qle+L+++F+ +p+P+r+ re+LA+e+gL  r+++v
   pF1KB7668   180    RRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQV 226  

                   WFQNRRakwkrqekkk<-*
                   WFQNRR k++r+++ +   
   pF1KB7668   227 WFQNRRSKERRMKQLS    242  

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