hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090425/iprscan-20090425-05333456/chunk_1/iprscan-20090425-05333456.nocrc
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Query sequence: pF1KB6475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 345.9    2.6e-99   1
SM00219                                                  11.8    7.3e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      13   300 ..     1   280 []    11.8  7.3e-12
SM00220    1/1      13   300 ..     1   231 []   345.9  2.6e-99

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 13 to 300: score 11.8, E = 7.3e-12
                   *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda.....keeFl
                       +   ++GeGa+G+V+k++  +++++ VA K ++  +++++     +
   pF1KB6475    13    YECVAEIGEGAYGKVFKARDLknggRFVALKRVRVQTgeegmPLSTI 59   

                   rEakiMkklGg..kHpNiVkLlGvcteegrr...FmevePlmivmEymeg
                   rE  ++++l  + +HpN+V+L+ vct +  r+++      l +v+E+++ 
   pF1KB6475    60 REVAVLRHL-EtfEHPNVVRLFDVCTVS--RtdrE---TKLTLVFEHVDQ 103  

                   GdLldyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcL
                    dL  yL k  + ++++++  ++++Q  +G ++L+s+++vHRDL   N+L
   pF1KB6475   104 -DLTTYLDKVPEPgVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL 152  

                   vgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                   v++ +++K +DFGL+R            +  ++ +  +    + +   AP
   pF1KB6475   153 VTSSGQIKLADFGLARIY----------SFQMALT--SVV--VTLWYRAP 188  

                   EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk
                   E+l  + + +  D WS G    E+f + ++   g      s+ + l ++ 
   pF1KB6475   189 EVLLQSSYATPVDLWSVGCIFAEMFRR-KPLFRG-----SSDVDQLGKIL 232  

                   kGyRlpkPendlpiS.....................svtCPdelYd.lMl
                   +   lp  e+     +++   +++  ++++ ++ +++vt  del ++l l
   pF1KB6475   233 DVIGLPGEED----WprdvalprqafhsksaqpiekFVTDIDELGKdLLL 278  

                   qCWaedPedRPtFsel..verl<-*
                   +C  ++P++R +     ++ ++   
   pF1KB6475   279 KCLTFNPAKRISAYSAlsHPYF    300  

SM00220: domain 1 of 1, from 13 to 300: score 345.9, E = 2.6e-99
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik.........eril
                      Ye + ++G+Ga+GkV++ard k+ gr vA+K+++ ++++++ + +++
   pF1KB6475    13    YECVAEIGEGAYGKVFKARDLKnGGRFVALKRVRvqtgeegmpLSTI 59   

                   rEikiLkk....dHPNIVkLydvfed......dklylVmEyceGdlGdLf
                   rE+++L++ ++  HPN+V+L+dv+  +++++++kl lV+E++++   dL 
   pF1KB6475    60 REVAVLRHletfEHPNVVRLFDVCTVsrtdreTKLTLVFEHVDQ---DLT 106  

                   dllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiL
                   ++l+k + +g     + ++++ ++ Q+l++L++LHs++++HRDLKP+NiL
   pF1KB6475   107 TYLDKVPEPG----VPTeTIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL 152  

                   Lds..hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavD
                   ++s++++KlaDFGlAr+++ +   t++v+T++Y+APEvl +++Y + +vD
   pF1KB6475   153 VTSsgQIKLADFGLARIYsfqmalTSVVVTLWYRAPEVLlqsSYAT-PVD 201  

                   iWSlGcilyElltGkpPFp......qldlifkkig...............
                    WS+Gci++E++ +kp+F+++++ +ql +i+++ig +++++++++   ++
   pF1KB6475   202 LWSVGCIFAEMFRRKPLFRgssdvdQLGKILDVIGlpgeedwprdvalpr 251  

                   ..................SpeakdLikklLvkdPekRlta.eaLedeldi
                      ++++  + ++  ++ ++ +kdL+ k+L+++P+kR++a  aL      
   pF1KB6475   252 qafhsksaqpiekfvtdiDELGKDLLLKCLTFNPAKRISAySALS----- 296  

                   kaHPff<-*
                     HP+f   
   pF1KB6475   297 --HPYF    300  

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