hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090424/iprscan-20090424-20545115/chunk_1/iprscan-20090424-20545115.nocrc
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Query sequence: pF1KB9466
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00399                                                 134.9    8.7e-36   1
SM00430                                                 124.1    1.6e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00399    1/1     418   489 ..     1    72 []   134.9  8.7e-36
SM00430    1/1     565   729 ..     1   158 []   124.1  1.6e-32

Alignments of top-scoring domains:
SM00399: domain 1 of 1, from 418 to 489: score 134.9, E = 8.7e-36
                   *->sepCaVCgdpAsGyHfGvlsCrACkaFFRRtvvlkkkYkCkknnnCe
                      +++C+VC+d AsG+H+Gvl+C +Ck FF+R+v  +++Y C + n+C 
   pF1KB9466   418    PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCI 464  

                   idkkgRnrCRaCRlkKClevGMnpe<-*
                   idk +R++C aCR++KCl++GMn e   
   pF1KB9466   465 IDKIRRKNCPACRYRKCLQAGMNLE    489  

SM00430: domain 1 of 1, from 565 to 729: score 124.1, E = 1.6e-32
                   *->ewwerdllltvewaksfpfFreLsleDqiiLLksfwfelllLesayr
                      +++ r++ ++v+wak +p+Fr+L+l+Dq++LL+++w+ l+ + +++r
   pF1KB9466   565    MLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWR 611  

                   sa.lkk.sdlllfpdgtyirpd...lf.pfldrildelv.plreLkltde
                   s+++     l+++pd++++ +  +  +  + ++++  +++ l++L+++ e
   pF1KB9466   612 SYrQSSaNLLCFAPDLIINEQRmtlPCmYDQCKHMLYVSsELHRLQVSYE 661  

                   EyalLkaillfnp.agpglseegqeiveklqeklsnaLhdYylknypm.p
                   Ey+++k +ll+++    gl +  qe+ ++++  ++++L + ++k+ ++++
   pF1KB9466   662 EYLCMKTLLLLSSvPKDGLKS--QELFDEIRMTYIKELGKAIVKREGNsS 709  

                   nypsRfakLllllpslrkis<-*
                   +  +Rf +L++ll+s++ ++   
   pF1KB9466   710 QNWQRFYQLTKLLDSMHEVV    729  

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