hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080627/iprscan-20080627-01225248/chunk_1/iprscan-20080627-01225248.nocrc
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Query sequence: pF1KB7689
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00348                                                 218.2    7.4e-61   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00348     1/1       1   114 [.     1   118 []   218.2  7.4e-61

Alignments of top-scoring domains:
SM00348: domain 1 of 1, from 1 to 114: score 218.2, E = 7.4e-61
                   *->maerrmrLrpWLveqveSgqYPGHLcWlDeEKTrFRIPWkHaarsdf
                      m+++rmr+rpWL+eq++S+++PG L Wl++EK++F+IPW+Haar+++
   pF1KB7689     1    MPVERMRMRPWLEEQINSNTIPG-LKWLNKEKKIFQIPWMHAARHGW 46   

                   deeeDaeiFkawavarGiyqpggrspdpkeckkWkarlrcAlrksrdfee
                   d e+Da +F+ wa+++G+ qpg+++pdp   k+Wka++rcA+++++d+ee
   pF1KB7689    47 DVEKDAPLFRNWAIHTGKHQPGVDKPDP---KTWKANFRCAMNSLPDIEE 93   

                   ikdrsrddppdpykVyrLlpe<-*
                   +kd s ++++++++Vyr+lp    
   pF1KB7689    94 VKDKSIKKGNNAFRVYRMLPL    114  

//