hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080306/iprscan-20080306-12303318/chunk_1/iprscan-20080306-12303318.nocrc
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Query sequence: pF1KB8993
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00415                                                  50.2    2.7e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00415    1/1      76   194 ..     1   115 []    50.2  2.7e-10

Alignments of top-scoring domains:
SM00415: domain 1 of 1, from 76 to 194: score 50.2, E = 2.7e-10
                   *->qpppFltKLyqlVeDpstdkiIsWSpsGksFvvwdpeeFakelLp..
                         +F +KL+++Ve  +    IsW+++G++ v+ ++e F ke+L+++
   pF1KB8993    76    LSLNFPRKLWKIVESDQFK-SISWDENGTCIVI-NEELFKKEILEtk 120  

                   ...ryFKHnNfsSFVRQLNmYGFrKvdpieqggl.lsstgkk.tdv.ped
                    + r F  + + SFVRQLN YGF K++  +q+++ l++ +  +++++   
   pF1KB8993   121 apyRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAfLATFLSEeKESsVLS 170  

                   rwEF.anpdggiFkrGqpeLLknIkRk<-*
                   + +F  np+   FkrG+p+LL  +kR+   
   pF1KB8993   171 KLKFyYNPN---FKRGYPQLLVRVKRR    194  

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