hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080304/iprscan-20080304-21042692/chunk_1/iprscan-20080304-21042692.nocrc
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Query sequence: pF1KB4014
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  77.4    1.8e-18   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     358   382 ..     1    23 []    22.2    0.074
SM00355      2/3     388   412 ..     1    23 []    28.9  0.00068
SM00355      3/3     418   440 ..     1    23 []    26.3   0.0043

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 358 to 382: score 22.2, E = 0.074
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gCgk++   ++Lk H r+H   
   pF1KB4014   358    HICSHpGCGKTYFKSsHLKAHTRTH    382  

SM00355: domain 2 of 3, from 388 to 412: score 28.9, E = 0.00068
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gC ++f + ++L rH r+H   
   pF1KB4014   388    FSCSWkGCERRFARSdELSRHRRTH    412  

SM00355: domain 3 of 3, from 418 to 440: score 26.3, E = 0.0043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ C+++f + ++L++H r+H   
   pF1KB4014   418    FACPM-CDRRFMRSdHLTKHARRH    440  

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