hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090918/iprscan-20090918-21472992/chunk_1/iprscan-20090918-21472992.nocrc
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Query sequence: pF1KB3975
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 274.5    8.4e-78   1
SM00219                                                 -65.9    4.6e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     111   357 ..     1   280 []   -65.9  4.6e-07
SM00220    1/1     111   431 ..     1   231 []   274.5  8.4e-78

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 111 to 357: score -65.9, E = 4.6e-07
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak
                       + +  +G G FG+V+k+   ++++ VA+K +k+ +  +     E++
   pF1KB3975   111    YEIDSLIGKGSFGQVVKAYDHqtqELVAIKIIKNKKafLNQAQIELR 157  

                   iMkklGgkHpNiVkLlGvcteegrr.FmevePlmivmEymegGdLldyLr
                   ++     +H+   k + v ++   r+Fm    l++v+E+ ++ +L d Lr
   pF1KB3975   158 LLELM-NQHDTEMKYYIVHLK---RhFMFRNHLCLVFELLSY-NLYDLLR 202  

                   knrpk.lslsdLlsfAlQIAkGMeYLe..sknfvHRDLAARNcLvgenk.
                   +++ +++sl    + A Q +    +L++++  ++H DL   N+L+ ++k+
   pF1KB3975   203 NTHFRgVSLNLTRKLAQQLCTALLFLAtpELSIIHCDLKPENILLCNPKr 252  

                   .vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                   + +KI DFG s  l+          y       +++        +PE+l 
   pF1KB3975   253 sAIKIVDFGSSCQLGQR-------IYQYI----QSR-----FYRSPEVLL 286  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR
                      +  + D WS G  L E+ t Ge+  +g      + +++ + ++  + 
   pF1KB3975   287 GTPYDLAIDMWSLGCILVEMHT-GEPLFSGS----NEVDQMNRIVEVLGI 331  

                   lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel...verl<-*
                   +p                         +  P+ R  F+ l+++   l   
   pF1KB3975   332 PPAAML---------------------DQAPKARKYFERLpggGWTL    357  

SM00220: domain 1 of 1, from 111 to 431: score 274.5, E = 8.4e-78
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik
                      Ye+  ++GkG+FG+V +a+d+ t++lvAiK+ik+++   ++++ E++
   pF1KB3975   111    YEIDSLIGKGSFGQVVKAYDHQTQELVAIKIIKnkkaflNQAQIELR 157  

                   iLkk.......dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkr
                   +L+  ++++++   +IV+L+ +f  +++l+lV+E+++    +L+dll++ 
   pF1KB3975   158 LLELmnqhdteMKYYIVHLKRHFMFrNHLCLVFELLSY---NLYDLLRNT 204  

                   grrglrkvlsE.earfyfrQilsaLeYLH..sqgIiHRDLKPeNiLLds.
                     rg     s + +r++++Q++ aL +L ++++ IiH+DLKPeNiLL+++
   pF1KB3975   205 HFRG----VSLnLTRKLAQQLCTALLFLAtpELSIIHCDLKPENILLCNp 250  

                   ...hvKlaDFGlArql....ttfvGTpeYmAPEvl...gYgkpavDiWSl
                   +++ +K+ DFG+++ql+++ + ++ +++Y++PEvl +++Y+  a+D+WSl
   pF1KB3975   251 krsAIKIVDFGSSCQLgqriYQYIQSRFYRSPEVLlgtPYDL-AIDMWSL 299  

                   GcilyElltGkpPFp......qldlifkkig...................
                   Gcil E+ tG+p+F+++++ +q+++i +++g ++    +  ++ +++ ++
   pF1KB3975   300 GCILVEMHTGEPLFSgsnevdQMNRIVEVLGippaamldqapkarkyfer 349  

                   ..................................................
                    ++++++ +++++ ++++ ++++++  +  +  ++++++++ +++++++ 
   pF1KB3975   350 lpgggwtlrrtkelrkdyqgpgtrrlqevlgvqtggpggrragepghspa 399  

                   .SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   +   + dL+ ++L+++P+ R++   aL+       H ff   
   pF1KB3975   400 dYLRFQDLVLRMLEYEPAARISPlGALQ-------HGFF    431  

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