hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080306/iprscan-20080306-09240590/chunk_1/iprscan-20080306-09240590.nocrc
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Query sequence: pF1KA1531
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  69.0    5.9e-16   4
SM00082                                                  36.1    4.7e-06   1
SM00409                                                  26.4     0.0039   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/4      82   106 ..     1    24 []     5.9       78
SM00369     2/4     107   130 ..     1    24 []    21.2     0.14
SM00369     3/4     131   154 ..     1    24 []    27.8   0.0015
SM00369     4/4     155   178 ..     1    24 []    14.0        8
SM00082     1/1     190   240 ..     1    55 []    36.1  4.7e-06
SM00409     1/1     253   346 ..     1    58 []    26.4   0.0039

Alignments of top-scoring domains:
SM00369: domain 1 of 4, from 82 to 106: score 5.9, E = 78
                   *->LpnL.reLdLsnNqLtsLPpgaFqg<-*
                      Lpn + +L LsnN++t L +g F g   
   pF1KA1531    82    LPNGtVTLLLSNNKITGLRNGSFLG    106  

SM00369: domain 2 of 4, from 107 to 130: score 21.2, E = 0.14
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L++LdL nN ++++ pgaF g   
   pF1KA1531   107    LSLLEKLDLRNNIISTVQPGAFLG    130  

SM00369: domain 3 of 4, from 131 to 154: score 27.8, E = 0.0015
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++LdLsnN++  L +++Fqg   
   pF1KA1531   131    LGELKRLDLSNNRIGCLTSETFQG    154  

SM00369: domain 4 of 4, from 155 to 178: score 14.0, E = 8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp L +L+ s+N ++sL pg+F+    
   pF1KA1531   155    LPRLLRLNISGNIFSSLQPGVFDE    178  

SM00082: domain 1 of 1, from 190 to 240: score 36.1, E = 4.7e-06
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                        + CDC+LrwLl+w ++   + lq ++ +++Ca+P++l+  + l +
   pF1KA1531   190    EFLTCDCHLRWLLPWAQN---RSLQLSE-HTLCAYPSALHA-QALGS 231  

                   lp.sefsCp<-*
                   l ++   C+   
   pF1KA1531   232 LQeAQLCCE    240  

SM00409: domain 1 of 1, from 253 to 346: score 26.4, E = 0.0039
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                      + +++v  G+++ ++C+as  +++++i+Wy+++ +  ++ + +    
   pF1KA1531   253    SLrQVVFQGDRLPFQCsASylgndtRIRWYhnrapvegdeqagilla 299  

                   .............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLt
                    +  ++ +  ++ Lt++++ +  s   G+  C+++   g+as+   +++ 
   pF1KA1531   300 eslihdctfitseLTLsHIGVWAS---GEWECTVSmaQGNASK--KVEIV 344  

                   Vl<-*
                   Vl   
   pF1KA1531   345 VL    346  

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