hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080306/iprscan-20080306-04172260/chunk_1/iprscan-20080306-04172260.nocrc
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Query sequence: pF1KSDA0969
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  81.6    9.4e-20   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      60   160 ..     1    82 []    81.6  9.4e-20

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 60 to 160: score 81.6, E = 9.4e-20
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      v+k GwL k+ +++ ++w kr+fvL +++L+yyk++++++  gsipL
  pF1KSDA096    60    VTKAGWLFKQAssgVkQWNKRWFVLVDRCLFYYKDEkeeSILGSIPL 106  

                   sgcsvre.p.........cFeivt.dr.tlllqAeseeereeWvealqsa
                    + +v    ++++ +++++F+  + + +t++++Aes+ee+e W++a+ +a
  pF1KSDA096   107 LSFRVAAvQpsdnisrkhTFKAEHaGVrTYFFSAESPEEQEAWIQAMGEA 156  

                   iaka<-*
                   ++ +   
  pF1KSDA096   157 ARVQ    160  

//