hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-19171737/chunk_1/iprscan-20080305-19171737.nocrc
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Query sequence: pF1KSDA0677
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 225.5    4.4e-63   1
SM00333                                                 112.7    4.2e-29   2
SM00545                                                  84.6    1.2e-20   1
SM00249                                                  64.0    1.9e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00545    1/1      13    55 ..     1    45 []    84.6  1.2e-20
SM00558    1/1     142   308 ..     1   214 []   225.5  4.4e-63
SM00249    1/2     709   767 ..     1    39 []    30.7  0.00021
SM00249    2/2     829   885 ..     1    39 []    33.3  3.3e-05
SM00333    1/2     897   954 ..     1    60 []    50.8  1.8e-10
SM00333    2/2     955  1011 ..     1    60 []    61.9  8.3e-14

Alignments of top-scoring domains:
SM00545: domain 1 of 1, from 13 to 55: score 84.6, E = 1.2e-20
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                      +i++fyPt+eEF+++++YI++I++ +G A+++G +KvVPPk+WkP  
  pF1KSDA067    13    RIMTFYPTMEEFRNFSRYIAYIES-QG-AHRAGLAKVVPPKEWKP   55   

                   *
                    
  pF1KSDA067     -   -    

SM00558: domain 1 of 1, from 142 to 308: score 225.5, E = 4.4e-63
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      + + ++wn+ +l               ++l+ ++ke +  +i g+++
  pF1KSDA067   142    EKHVDEWNIGRLR--------------TILDLVEKE-SGITIEGVNT 173  

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         pyly+Gm+   ++++ wH++d+dlyS+Nylh+g++   K Wy +
  pF1KSDA067   174 ------PYLYFGMW---KTSFAWHTEDMDLYSINYLHFGEP---KSWYSV 211  

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   Ppe+  +le+l+k +        +p++++++  +l+h++t+isp +lkk 
  pF1KSDA067   212 PPEHGKRLERLAKGF--------FPGSAQSCEAFLRHKMTLISPLMLKKY 253  

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           +p  +++Q++Gef++++p+ yHa+fn+G fn+a++ NF
  pF1KSDA067   254 G-----------IPFDKVTQEAGEFMITFPYGYHAGFNHG-FNCAESTNF 291  

                   aspewlpmglrlveelr<-*
                   a+ +w+++g+++v + +   
  pF1KSDA067   292 ATRRWIEYGKQAVLCSC    308  

SM00249: domain 1 of 2, from 709 to 767: score 30.7, E = 0.00021
                   *->yCvCgk..................g.llqCdkgCdrwyHv.Clgppl
                      +C+   + +++ + +++  ++++++ l++C  +C++ +H +C+g p+
  pF1KSDA067   709    MCFTSTgcstdinlstpyleedgtSiLVSCK-KCSVRVHAsCYGVPP 754  

                   eepdg.wyCprCk<-*
                      +++w C+rC+   
  pF1KSDA067   755 AKASEdWMCSRCS    767  

SM00249: domain 2 of 2, from 829 to 885: score 33.3, E = 3.3e-05
                   *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep
                       C +C+k+++++ g ++qC++++C++++Hv+C++ ++   ++++ + 
  pF1KSDA067   829    KCiFCKKrrkrtaGcCVQCShGRCPTAFHVsCAQAAGVmmqpddwPF 875  

                   dg.wyCprCk<-*
                        C r+k   
  pF1KSDA067   876 VVfITCFRHK    885  

SM00333: domain 1 of 2, from 897 to 954: score 50.8, E = 1.8e-10
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      + + +G++v+ +++ +g++Y +++++ ++e ++yeV+f+D  +++++
  pF1KSDA067   897    QSITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFSDNL 941  

                   plsdlrqlpekfa<-*
                   +++d+ + ++ ++   
  pF1KSDA067   942 YPEDIVSQDCLQF    954  

SM00333: domain 2 of 2, from 955 to 1011: score 61.9, E = 8.3e-14
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++++G++v++rw+ Dg+ Y A+ ++  +  q+y+V f+D G++ vv
  pF1KSDA067   955    GPPAEGEVVQVRWT-DGQVYGAKFVASHPI-QMYQVEFED-GSQLVV 998  

                   plsdlrqlpekfa<-*
                   +++d+++l+e+++   
  pF1KSDA067   999 KRDDVYTLDEELP    1011 

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