hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-13172205/chunk_1/iprscan-20080305-13172205.nocrc
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Query sequence: pF1KSDA0414
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                  94.1    1.6e-23   1
SM00355                                                  46.6    3.2e-09   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      33   127 ..     1   114 []    94.1  1.6e-23
SM00355      1/3     373   394 ..     1    23 []    12.0       14
SM00355      2/3     400   422 ..     1    23 []    24.6    0.014
SM00355      3/3     428   448 ..     1    23 []    10.0       23

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 33 to 127: score 94.1, E = 1.6e-23
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv +vv+g         ++f+a  HkavLaa+   SpyF +  + +
  pF1KSDA041    33    CDVSIVVQG---------HIFRA--HKAVLAAS---SPYFCDQVLLk 65   

                   ....ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelA
                   ++++i l+D     +++p +F+ +L   Yt++l +p     ++ ++L +A
  pF1KSDA041    66 nsrrIVLPD-----VMNPRVFENILLSSYTgRLVMPAP---EIVSYLTAA 107  

                   dfldSYGqip.lvelCeefllknl<-*
                   +fl    q+ ++v++C+e l+ n    
  pF1KSDA041   108 SFL----QMWhVVDKCTEVLEGNP    127  

SM00355: domain 1 of 3, from 373 to 394: score 12.0, E = 14
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cgksf++k++  rHm +H   
  pF1KSDA041   373    YPC-Q-CGKSFTHKsQRDRHMSMH    394  

SM00355: domain 2 of 3, from 400 to 422: score 24.6, E = 0.014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cgk+f+ k++L+ Hm++H   
  pF1KSDA041   400    YGCGV-CGKKFKMKhHLVGHMKIH    422  

SM00355: domain 3 of 3, from 428 to 448: score 10.0, E = 23
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i C k+f +++++ rH+      
  pF1KSDA041   428    YECNI-CAKRFMWRdSFHRHVT--    448  

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