hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-03211992/chunk_1/iprscan-20080305-03211992.nocrc
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Query sequence: pF1KSDA0111
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 208.6    5.4e-58   1
SM00490                                                 133.8    1.8e-35   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      57   254 ..     1   219 []   208.6  5.4e-58
SM00490      1/1     291   372 ..     1    86 []   133.8  1.8e-35

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 57 to 254: score 208.6, E = 5.4e-58
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      gf+k++++Q++ai+ +++grdvi++ + G+GKT++f +++l++l+ +
  pF1KSDA011    57    GFeKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ 103  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                           + +++L+l+PtreLa Q+++ l +lg +++      ++++++
  pF1KSDA011   104 V-------RETQALILAPTRELAVQIQKGLLALGDYMN------VQCHAC 140  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                   +gG++     e++rkl  g+ +++ +Tpgr++d++++++ l+ + +++++
  pF1KSDA011   141 IGGtNV---GEDIRKLDYGQ-HVVAGTPGRVFDMIrRRS-LRTrAIKMLV 185  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eienll
                   lDEa+++l++      gf++q+ ++ ++lp++ q++l SAT+p+ei +++
  pF1KSDA011   186 LDEADEMLNK------GFKEQIYdVYRYLPPATQVVLISATLPhEILEMT 229  

                   klflnlpelfpnpvfisvgf...tlepieqf<-*
                    +f+       +p++i v++++ tle+i+qf   
  pF1KSDA011   230 NKFMT------DPIRILVKRdelTLEGIKQF    254  

SM00490: domain 1 of 1, from 291 to 372: score 133.8, E = 1.8e-35
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      d+l+e+++e+    ++ v ++HG+++q+eRe i+++Fr+g ++vL++
  pF1KSDA011   291    DWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Tdv +rGlD+p+v+l+Inydlp + + yi+RiGR GR+G   
  pF1KSDA011   334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG    372  

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