hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080304/iprscan-20080304-22003268/chunk_1/iprscan-20080304-22003268.nocrc
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Query sequence: pF1KA0234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 224.7      8e-63   1
SM00249                                                 105.5    6.1e-27   2
SM00545                                                  94.9    9.7e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00545    1/1      13    54 ..     1    45 []    94.9  9.7e-24
SM00249    1/2     259   305 ..     1    39 []    62.2  6.6e-14
SM00558    1/1     401   567 ..     1   214 []   224.7    8e-63
SM00249    2/2    1117  1178 ..     1    39 []    43.3  3.2e-08

Alignments of top-scoring domains:
SM00545: domain 1 of 1, from 13 to 54: score 94.9, E = 9.7e-24
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                      e+Pvf+P+++EF+Dpl+YI+kIrp   +Aek+GI+K+ PP++W+P  
   pF1KA0234    13    ECPVFEPSWAEFQDPLGYIAKIRP---IAEKSGICKIRPPADWQP   54   

                   *
                    
   pF1KA0234     -   -    

SM00249: domain 1 of 2, from 259 to 305: score 62.2, E = 6.6e-14
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      +C+vC +++++++ll+Cd gCd+ yH+ Cl ppl+++p+g w+Cp+C
   pF1KA0234   259    ICqVCSRgdedDkLLFCD-GCDDNYHIfCLLPPLPeIPRGiWRCPKC 304  

                   k<-*
                       
   pF1KA0234   305 I    305  

SM00558: domain 1 of 1, from 401 to 567: score 224.7, E = 8e-63
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +y++  wnl+ +P          ++ +++l +++      di+g+ v
   pF1KA0234   401    EYATSGWNLNVMP----------VLDQSVLCHIN-----ADISGMKV 432  

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         p+ly+Gm    +s ++wHi+d+++yS+Nylh+g++   K+Wy++
   pF1KA0234   433 ------PWLYVGMV---FSAFCWHIEDHWSYSINYLHWGEP---KTWYGV 470  

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   P   ae le+++k++         p+lf +qpdll++l+t+++p  l  +
   pF1KA0234   471 PSLAAEHLEEVMKML--------TPELFDSQPDLLHQLVTLMNPNTLMSH 512  

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           vpv r++Q++Gefv+++p++yH++fn G +n+a+avNF
   pF1KA0234   513 G-----------VPVVRTNQCAGEFVITFPRAYHSGFNQG-YNFAEAVNF 550  

                   aspewlpmglrlveelr<-*
                   ++ +wlp g +++e++r   
   pF1KA0234   551 CTADWLPAGRQCIEHYR    567  

SM00249: domain 2 of 2, from 1117 to 1178: score 43.3, E = 3.2e-08
                   *->yCvCgk....g.llqCdkgCdrwyHv.Clgpple.............
                      +CvCg+ + + + lqCd  C++w+H +C++ p + ++++++ ++++ 
   pF1KA0234  1117    ICVCGQvpagVgVLQCD-LCQDWFHGqCVSVPHLltspkpsltsspl 1162 

                   ....epdg.wyCprCk<-*
                       e d +++Cp C    
   pF1KA0234  1163 lawwEWDTkFLCPLCM    1178 

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