hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090424/iprscan-20090424-16454562/chunk_1/iprscan-20090424-16454562.nocrc
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Query sequence: pF1KB7668
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.ls LIM domain                                     189.9    5.5e-54   2
PF00412.12.fs LIM domain                                     186.0    3.6e-53   2
PF00046.19.ls Homeobox domain                                 97.0    5.3e-26   1
PF00046.19.fs Homeobox domain                                 95.0    2.1e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.ls   1/2       5    61 ..     1    61 []    96.4    8e-26
PF00412.12.fs   1/2       5    61 ..     1    61 []    94.4  1.1e-26
PF00412.12.fs   2/2      64   124 ..     1    61 []    91.5  7.4e-26
PF00412.12.ls   2/2      64   124 ..     1    61 []    93.6  5.7e-25
PF00046.19.fs   1/1     181   237 ..     1    57 []    95.0  2.1e-25
PF00046.19.ls   1/1     181   237 ..     1    57 []    97.0  5.3e-26

Alignments of top-scoring domains:
PF00412.12.ls: domain 1 of 2, from 5 to 61: score 96.4, E = 8e-26
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC +pI+dr+l+ ++ld++wH++C +C++C+++L+e+  +f+++g
   pF1KB7668     5    CAGCERPILDRFLL-NVLDRAWHIKCVQCCECKTNLSEK--CFSREG 48   

                   sklYCkhDyyklfg<-*
                    klYCk+D++++fg   
   pF1KB7668    49 -KLYCKNDFFRRFG    61   

PF00412.12.fs: domain 1 of 2, from 5 to 61: score 94.4, E = 1.1e-26
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC +pI+dr+l+ ++ld++wH++C +C++C+++L+e+  +f+++g
   pF1KB7668     5    CAGCERPILDRFLL-NVLDRAWHIKCVQCCECKTNLSEK--CFSREG 48   

                   sklYCkhDyyklfg<-*
                    klYCk+D++++fg   
   pF1KB7668    49 -KLYCKNDFFRRFG    61   

PF00412.12.fs: domain 2 of 2, from 64 to 124: score 91.5, E = 7.4e-26
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC+++I++ +lvr+A+ kv+H++CF+C+vC+k+L++g e +++d+
   pF1KB7668    64    CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDE 110  

                   sklYCkhDyyklfg<-*
                   +k++Ck Dy+   +   
   pF1KB7668   111 NKFVCKDDYLSSSS    124  

PF00412.12.ls: domain 2 of 2, from 64 to 124: score 93.6, E = 5.7e-25
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC+++I++ +lvr+A+ kv+H++CF+C+vC+k+L++g e +++d+
   pF1KB7668    64    CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDE 110  

                   sklYCkhDyyklfg<-*
                   +k++Ck Dy+   +   
   pF1KB7668   111 NKFVCKDDYLSSSS    124  

PF00046.19.fs: domain 1 of 1, from 181 to 237: score 95.0, E = 2.1e-25
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RTt+ + Qle+L+++F+ +++P+r+ Re+LA+++gL  r+++vW
   pF1KB7668   181    RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 227  

                   FQNRRaKwKk<-*
                   FQNRR K+++   
   pF1KB7668   228 FQNRRSKERR    237  

PF00046.19.ls: domain 1 of 1, from 181 to 237: score 97.0, E = 5.3e-26
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RTt+ + Qle+L+++F+ +++P+r+ Re+LA+++gL  r+++vW
   pF1KB7668   181    RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 227  

                   FQNRRaKwKk<-*
                   FQNRR K+++   
   pF1KB7668   228 FQNRRSKERR    237  

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