hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090426/iprscan-20090426-07342955/chunk_1/iprscan-20090426-07342955.nocrc
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Query sequence: pF1KE0846
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    103.0      2e-34   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    104.8    2.3e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      41   290 ..     1   272 []   103.0    2e-34
PF00001.12.ls   1/1      41   290 ..     1   272 []   104.8  2.3e-28

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 41 to 290: score 103.0, E = 2e-34
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+++ ++i+++++l+ p+++f+lNL+v    f+++ +p +l+ l +
   pF1KE0846    41    GNAIITVIISLNQSLHVPMYLFLLNLSVVEVSFSAVITPEMLVVLST 87   

                   gedWpfGs.alCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr
                     ++++ s ++C  +++++++++ + ++lL a+++DR+ AI+hPl+y+++
   pF1KE0846    88 --EKTMISfVGCFAQMYFILLFGGTECFLLGAMAYDRFAAICHPLNYPVI 135  

                   rtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidf
                   ++ + + ++++++ W+ ++ ++  + + +   ++++g + +n+ +C    
   pF1KE0846   136 MN-RGVFMKLVIFSWISGIMVATVQ-TTWVFSFPFCGPNEINHLFCETPP 183  

                   pevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga
                   + +  + +     +ya+  t++  ++P+l+il  Y r+l ++ k+++   
   pF1KE0846   184 VLELVCADTFLFEIYAFTGTILIVMVPFLLILLSYIRVLFAILKMPS--- 230  

                   skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe
                           r+ a+ +++ +++ v +++  + + +l++  + s        
   pF1KE0846   231 -----TTGRQKAFSTCASHLTSVTLFYGTANMTYLQPKSgYS-------- 267  

                   lervlptallvtlwLayvNsclNPiIY<-*
                       ++t +l++l ++ + + lNP+IY   
   pF1KE0846   268 ----PETKKLISLAYTLLTPLLNPLIY    290  

PF00001.12.ls: domain 1 of 1, from 41 to 290: score 104.8, E = 2.3e-28
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+++ ++i+++++l+ p+++f+lNL+v    f+++ +p +l+ l +
   pF1KE0846    41    GNAIITVIISLNQSLHVPMYLFLLNLSVVEVSFSAVITPEMLVVLST 87   

                   gedWpfGs.alCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr
                     ++++ s ++C  +++++++++ + ++lL a+++DR+ AI+hPl+y+++
   pF1KE0846    88 --EKTMISfVGCFAQMYFILLFGGTECFLLGAMAYDRFAAICHPLNYPVI 135  

                   rtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidf
                   ++ + + ++++++ W+ ++ ++  + + +   ++++g + +n+ +C    
   pF1KE0846   136 MN-RGVFMKLVIFSWISGIMVATVQ-TTWVFSFPFCGPNEINHLFCETPP 183  

                   pevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga
                   + +  + +     +ya+  t++  ++P+l+il  Y r+l ++ k+++   
   pF1KE0846   184 VLELVCADTFLFEIYAFTGTILIVMVPFLLILLSYIRVLFAILKMPS--- 230  

                   skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe
                           r+ a+ +++ +++ v +++  + + +l++  + s        
   pF1KE0846   231 -----TTGRQKAFSTCASHLTSVTLFYGTANMTYLQPKSgYS-------- 267  

                   lervlptallvtlwLayvNsclNPiIY<-*
                       ++t +l++l ++ + + lNP+IY   
   pF1KE0846   268 ----PETKKLISLAYTLLTPLLNPLIY    290  

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