hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090426/iprscan-20090426-06262553/chunk_1/iprscan-20090426-06262553.nocrc
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Query sequence: pF1KE0830
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)     27.8    1.5e-09   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    -19.6    2.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.ls   1/1       1   229 [.     1   272 []   -19.6  2.1e-06
PF00001.12.fs   1/1       8   195 ..    26   224 ..    27.8  1.5e-09

Alignments of top-scoring domains:
PF00001.12.ls: domain 1 of 1, from 1 to 229: score -19.6, E = 2.1e-06
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                                        +++f+  LA++DL++  t+ p  ++ l++
   pF1KE0830     1    ------------------MYFFLNYLALSDLCYISTVAPKLMIDLLT 29   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    e++  ++  C ++ ++  + +   i+ L a+++D Y+AI++ l+y  + 
   pF1KE0830    30 -ERKIVSYNNCMIQLFITHFLGDIEIFILKAMAYDHYIAICKHLHYTIIT 78   

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   t ++ ++ +i+++ + +++ s  ++l+ +  ++++g + +++++C+++ p
   pF1KE0830    79 T-KQSCNTIIIACCTGGFIHSASQFLL-TIFLPFCGLNEIDQYFCYVY-P 125  

                   evstas.vktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga
                     + a  + +   +++++ + +  +l ++++ v Y++Il t+r       
   pF1KE0830   126 LLKLARiDIYRIGFLVIVNSGLISLLAFVILMVSYYLILSTIRVYSA--- 172  

                   skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe
                         +  ka+ t    ++v+vl+++P ++++++++ ++++        
   pF1KE0830   173 -----ESHTKALSTCSSHIIVVVLFFVP-ALFIYIRPAItFP-------- 208  

                   lervlptallvtlwLayvNsclNPiIY<-*
                        + + l++  +a   s l   IY   
   pF1KE0830   209 ---EDKVFVLFCAIIAPMFSLL---IY    229  

PF00001.12.fs: domain 1 of 1, from 8 to 195: score 27.8, E = 1.5e-09
                   *->LAvADLLflltlppwalyylvggedWpfGsalCklvtaldvvnmyaS
                      LA++DL++  t+ p  ++ l++ e++  ++  C ++ ++  + +   
   pF1KE0830     8    LALSDLCYISTVAPKLMIDLLT-ERKIVSYNNCMIQLFITHFLGDIE 53   

                   illLtaISiDRYlAIvhPlryrrrrtsprrAkvvillvWvlalllslPpl
                   i+ L a+++D Y+AI++ l+y  + t ++ ++ +i+++ + +++ s  ++
   pF1KE0830    54 IFILKAMAYDHYIAICKHLHYTIITT-KQSCNTIIIACCTGGFIHSASQF 102  

                   lfswvktveegngvvnvttClidfpevstas.vktwlvsyallstlvgFv
                   l+ +  ++++g + +++++C+++ p  + a  + +   +++++ + +  +
   pF1KE0830   103 LL-TIFLPFCGLNEIDQYFCYVY-PLLKLARiDIYRIGFLVIVNSGLISL 150  

                   lPllvilvcYtrIlrtlrkrarkgaskkrsskerkaaktllvvvvvFvlC
                   l ++++ v Y++Il t+r             +  ka+ t    ++v+vl+
   pF1KE0830   151 LAFVILMVSYYLILSTIRVYSA--------ESHTKALSTCSSHIIVVVLF 192  

                   WlP<-*
                   ++P   
   pF1KE0830   193 FVP    195  

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